chr24_16

cmsearch-Rfam

Family :

SCARNA2

Id:

RF01268

Type:

Gene; snRNA; snoRNA; scaRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF01268

Description:

not description

Score:

25.3

E-value:

0.0026

From sequence:

682567

To sequence:

682325

Alignments:

                                                                     v  v                                         NC
                 :::::::::::::::::::::::::::::::::::::::::::::::::::(((((<<<<<<._____>>>>>>,,,,,,,,,,,,,,,,<-<<<< CS
  RF01268      1 auuuaaggGaGGGAGaGcGGCcuGGGguuuGggUGuuGUGuGUgGugcuGuggcgccgcGcG.gAAGGCgCguguagggcgagUGuGaGUgggcgc 95    
                 +UUU A GG  G A  G  GC   GGGU + G U    U  G  G G UGU  :G CG:::: G   G::::UGU G G+G GUGUG+GUG+::::
    chr24 682567 GUUUCACGGCAGAAUGGACGCGAUGGGUAAUGAUAGAUUUAGCUGAGGUGUGUAGCCGUGUGuGUGUGUGUGUGU-GUGUGUGUGUGUGUGUGUGU 682473
                 *************************************************************94444455555554.34445555555555555555 PP

                                   v  v                  v  v              v  v                                   NC
                 ____>>>>->,,<<<--<<<<<-<<____________>>->>>>>-->>>,,,,,,,,))))),,,,,,,,,,,~~~~~~,,,,,,,,,,,,,,,, CS
  RF01268     96 GuGagcgcGuGaGuguGcgcgcgcgGaGCgUGcaAGgcgAgcgcgUGcgCCCgCCCcUgcgccCCUCCCCcCGC*[65]*GCUcuCCUCCUGCGAA 250   
                 GUG+::::GUG G:GUG: C   C GA  +UG A GG G   G :  C:C C   CCU C:   CUCCCC C        GCUC+CC C UG    
    chr24 682472 GUGUGUGUGUGCGUGUGUGCUACCUGACAAUGAAGGGGGGAGGGGGUCACUCCAUCCUCCUCUUCUCCCCGCUU*[55]*GCUCCCCACUUG---- 682332
                 55555555555555555555555679999999999997766667777888777777777776666666655533...8..888888877765.... PP

                                          NC
                 ,,,,,~~~~~~~~~~~~~~~~~~: CS
  RF01268    251 GCCCu*[58]**[28]**[79]*A 421   
                                        A
    chr24 682331 -----*[ 2]**[ 1]**[ 3]*A 682325
                 ........8.....8.....9..* PP

>>

RNAfold
>chr24_16
GCAGGAAAGAGGAGGAAGAUGGGAUUGGGGCAACGGAAGAUAAGAAGUCA
UCGAAAGAGAGGCAGGUGGAAGCAGGAGUGUGUAUCUGUGUGUUCCAAGU
GGGGAGCUCAUGUGAUGGGUAAGUGCCAGAGAAUCAACAAGCAAGCAAAA
GUUUAACUACGGAAGCGGGGAGAAGAGGAGGAUGGAGUGACCCCCUCCCC
CCUUCAUUGUCAGGUAGCACACACGCACACACACACACACACACACACAC
ACACACACACACACACACACACACGGCUACACACCUCAGCUAAAUCUAUC
AUUACCCAUCGCGUCCAUUCUGCCGUGAAACGCCACUUCACUCGACCCCG
CAGCCCUGUCACAGACCCACCGCGUGCGGUGCGAGGCAGCCGUAGGCACA
CGCACUGCAGCAAGGCGCCC
((((((....(((.(..((((((.((.(.....).)).........(((.((......))))).(((((((((..(((((((((.(((((((((((......))).....((((.((.((..((((............((((........)))).......((((.((((....((((.((..........))))))))))))))...........))))..)).)))))).....................................)))))))).)))))).))).)))...))))))....)))))).).))).)))))).......((((......((((.(.(((((((...(((...))).....)).))))).)))))...((.((((((....)).)))).))..))))... (-113.60)

Length sequence

: 420

Length match:

241