chr24_17

cmsearch-Rfam

Family :

SCARNA2

Id:

RF01268

Type:

Gene; snRNA; snoRNA; scaRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF01268

Description:

not description

Score:

25.3

E-value:

0.0024

From sequence:

760721

To sequence:

760822

Alignments:

                  v  v   v       v   v                                    v                                v      NC
                 ((((<<<<<<_____>>>>>>,,,,,,,,,,,,,,,,<-<<<<____>>>>->,,<<<--<<<<<-<<____________>>->>>>>-->>>,,, CS
  RF01268     53 gcgccgcGcGgAAGGCgCguguagggcgagUGuGaGUgggcgcGuGagcgcGuGaGuguGcgcgcgcgGaGCgUGcaAGgcgAgcgcgUGcgCCCg 148   
                 : GC : G : A GG: C :   G G+G GUGUG+GUG+::::GUG+::::GUG+G: UG:G:G:   G G GUG+  G    :C:C:   :CCC+
    chr24 760721 ACGCAAGGAGAAGGGUGCUUG-CGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGU-GUGUGUGUGUGUGUGU-GCACGCCAACCCA 760813
                 ****99999999999999775.5777888888888888888888888888888888888888888.7788888888888877.************* PP

                        v  NC
                 ,,,,,)))) CS
  RF01268    149 CCCcUgcgc 157   
                 C C UGC :
    chr24 760814 CACAUGCAU 760822
                 ********* PP

>>

RNAfold
>chr24_17
AAAGAAAGAGGCGGGAGGGGCACAGUAUGUUAGGGAUAAUGAGGGGCAAG
CAGGCGGCGGGGUGAAGUGAGGUGGAGGUGGAGGCAAAAGGGGAAAGCUG
AAAAUUGAUAAUCAGCCAAUUAAGAACGGCCCCGGAAAGGAGCAGGAAAA
GGCGAAUAAACGCAAGGAGAAGGGUGCUUGCGUGUGUGUGUGUGUGUGUG
UGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGCACGCCAACC
CACACAUGCAUACUCGCUGCGCGUGCUGUUGCUGAAAUGACAUCCGGAAA
GAGCGAUUGAGGAAGGGGGAGGCCGCACAUGACGAAACUAAAAGAGGAGC
GCGAAAAAAGAAGCAAACGUGCAGACACAACAGCACAAGGGCGGACACAC
ACACGCGAGGGGACUCCUCCA
.............(((((((..(....(((((....))))).(((((............((.(((.((.((.....(((.....(.....).....))).....)).))..))).))...........)))))..................(((......))).............(((((((((((((((.(((.(.(((((...((((((((((((((((((.((..((((((....))))))..)).)))))))))))))...((((((((..((((.((....((...(((......((...........(.((....)).)...........))......)))...)).....)).)))).)))))))))))))...))))).).))).))))))))))))))).)..))))))). (-128.70)

Length sequence

: 421

Length match:

100