chr24_20

cmsearch-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

55.2

E-value:

2.4e-10

From sequence:

600788

To sequence:

600707

Alignments:

                                                                                                      NC
                 (((((((,,<<<<___.___.._>>>>,<<<<<_______>>>>>,,..........,,<<<<<_______>>>>>))))))): CS
  RF00005      1 GgagauaUAGCucAgU.GGU..AgaGCgucgGaCUuaaAAuCcgaag..........gcgcgGGUUCgAaUCCcgcuaucucCa 71    
                 G::G: :U :C::AGU GGU  A::G:GU::GACUUAA  UC::A+            CG:GGGUUCGAA CCC:C: :C::CA
    chr24 600788 GCUGGGGUUCCCGAGUuGGUcaAAGGGGUGAGACUUAAGUUCUCAU-gcgcaagcuu-CGUGGGUUCGAACCCCACCUCCAGCA 600707
                 **********************************************.8*******85.************************** PP

>>

RNAfold
>chr24_20
GCUGGAGGUGGGGUUCGAACCCACGAAGCUUGCGCAUGAGAACUUAAGUC
UCACCCCUUUGACCAACUCGGGAACCCCAGC
(((((.(((((((((((......))))((....)).(((((.......))))))))).....((......)).)))))))) (-22.80)

Length sequence

: 81

Length match:

80