chr24_3

cmsearch-Rfam

Family :

MIR1023

Id:

RF01043

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01043

Description:

not description

Score:

44.1

E-value:

5.5e-07

From sequence:

172236

To sequence:

172100

Alignments:

                                                                        vvv        vvv                            NC
                 <<<<<<<<<<<<<<<<<-<<<<<<<<<<<-<<<<<<<<<<---------------<<<<~~~~~~>>>>--------..--->>>>>>>>>>->>> CS
  RF01043     14 AgCuuGCAauUuacuguaCACUCUCUCCgUUUCcCUuCCcaUaAUGacuaGguUggucg*[27]*cgacGaUcAggA..gUugGGaAGgGAAUcGG 128   
                 ::::: C::U:::::::  :  CUC CC:UUUCCC::C::  +    +   ++U   C:      :             G  ::G::GGGAA :GG
    chr24 172236 CCUCCCCCCUCCCACACGGCGACUCGCCAUUUCCCCCCUUCCCUCUCACCACCUCCCCC*[30]*G-----------ggGGGAAGGGGGGAAAUGG 172128
                 ****************************************9998888888877744444...5..2...........33355************** PP

                                              NC
                 >>>>>>>>->>>>>>>>>>>>>>>>>:: CS
  RF01043    129 AGAGAGUGuacagugAauUGCaaGcUUg 156   
                  GAG  : +:::::::A::G :::::UG
    chr24 172127 CGAGUCGCCGUGUGGGAGGGGGGAGGUG 172100
                 **************************** PP

>>

RNAfold
>chr24_3
CACGCCUUCUCACCACCUCCCCCCUCCCACACGGCGACUCGCCAUUUCCC
CCCUUCCCCCCGUCCGUCCCUCCCCCUCACAUUGUUAAGAGGGGGGAGGU
GGUGAGAGGGAAGGGGGGAAAUGGCGAGUCGCCGUGUGGGAGGGGGGAGG
CGGAGGGGGUAACA
...(((((((..((.((((((((((((((((((((((((((((((((((((((((((((.((.(((.((.((((((((..........)))))))).))))))).).))))))))))))))))))))))))))))))))))))))))))).))))))))).... (-141.10)

Length sequence

: 164

Length match:

135