chr24_4

cmsearch-Rfam

Family :

mir-194

Id:

RF00257

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035195 gene silencing by miRNARF00257

Description:

Expression of miR-194 has been verified in mouse (MIR:MI0000236, MIR:MI0000733) [1] and human (MIR:MI0000488, MIR:MI0000732) [2].
miR-194 appears to be a vertebrate specific miRNA and has now been predicted or experimentally
confirmed in a range of vertebrate species (MIPF:MIPF0000055). The hairpin precursors (represented here) are predicted
based on base pairing and cross-species conservation -- their extents are not known. In this
case the mature sequence is excised from the 5' arm of the hairpin.

Score:

28.8

E-value:

0.0033

From sequence:

253596

To sequence:

253689

Alignments:

                         v                                                           v          NC
                 ::<<<<-<<<<<<--<<<<<<<<<-<<<<<--<<<<~~~~~~>>>>->>>>>->>>>>>>>>-->>>>>>-->>>>:: CS
  RF00257      1 uuggugucacCgcaUGUAACAGCAACuCCAUGUGGA*[13]*UCCAGUGGaGaUGCUGUUACuUgcGguggucaccaa 85    
                  U::::+: :C::+ GU:A AGCA C: CA G::G:      :C:: UG :G UGCU U:ACU ::G: :G ::::A 
    chr24 253596 CUCACCCAGUCAGGAGUGAUAGCAGCAGCA-GCAGC*[24]*GCUGCUGCUGCUGCUGUCACUCCUGAGUG-GGUGAG 253689
                 ******9***********************.66665...9..56666*********************997.9***** PP

RNAfold
>chr24_4
UCACCCAGUCAGGAGUGAUAGCAGCAGCAGCAGCGGGGAGGGGUGGAGGU
UGGCCAGUGCUGCUGCUGCUGCUGUCACUCCUGAGUGGGUGAG
(((((((.(((((((((((((((((((((((((((......(((........)))..))))))))))))))))))))))))))).))))))). (-74.90)

Length sequence

: 93

Length match:

92