chr24_6

cmsearch-Rfam

Family :

mir-253

Id:

RF01064

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01064

Description:

not description

Score:

39.1

E-value:

9.2e-06

From sequence:

172120

To sequence:

172218

Alignments:

                                          v                                                 v                     NC
                 ::<<<<<--<<<<<<<<<<<<<<<<<<<.-<<<-.<<<<<<<<<<____________>>>->>>>>>>>>>->->>>>>>>>>>>>>>>>>>---> CS
  RF01064      1 aUcguuCgagucgCcgccCuucuCaCaC.ACCuc.aCuaaCaCuaAccaCaGAUuuauaGAuGuuaGuaGGCGUuGuGggaaGggcgGcgacgauG 94    
                   :::UCG :::::C:CCC:U::C: :C  CC   :CU::C:CU:AC A  G  U A:AG :G::AG: GG G : :G::A:GGG:G:::::  +G
    chr24 172120 GCGACUCGCCAUUUCCCCCCUUCCCCCCgUCCGUcCCUCCCCCUCAC-AUUGU-UAAGAGGGGGGAGGUGGUGAGAGGGAAGGGGGGAAAUG-GCG 172212
                 *******9766666666666666666673677752666666666655.55554.45566667777788999987666666666666666665.79* PP

                        NC
                 >>>>:: CS
  RF01064     95 aacgua 100   
                 A:::  
    chr24 172213 AGUCGC 172218
                 ****** PP

>>

RNAfold
>chr24_6
GCGACUCGCCAUUUCCCCCCUUCCCCCCGUCCGUCCCUCCCCCUCACAUU
GUUAAGAGGGGGGAGGUGGUGAGAGGGAAGGGGGGAAAUGGCGAGUCGCC
((((((((((((((((((((((((((.((.(((.((.((((((((..........)))))))).))))))).).))))))))))))))))))))))))). (-79.30)

Length sequence

: 100

Length match:

97