chr24_7

cmsearch-Rfam

Family :

mir-253

Id:

RF01064

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01064

Description:

not description

Score:

38.8

E-value:

1.2e-05

From sequence:

172218

To sequence:

172120

Alignments:

                                               v v         v              v         v v                           NC
                 ::<<<<<-.-<<<<<<<<<<<<<<<<<<<-<<<-<<<<<<<<<<____________>>>->>>>>>>>>>->..->>>>>>>>>>>>>>>>>>--- CS
  RF01064      1 aUcguuCg.agucgCcgccCuucuCaCaCACCucaCuaaCaCuaAccaCaGAUuuauaGAuGuuaGuaGGCG..UuGuGggaaGggcgGcgacgau 93    
                   :::UCG  :U::CC:CCCUUC:C C CA C C:::::C:C :   ACA A    : GA:G::::: G CG    G G:GAAGGG:GG::A:G +
    chr24 172218 GCGACUCGcCAUUUCCCCCCUUCCCUCUCACCACCUCCCCCCUCUUAACA-A---UGUGAGGGGGAGGGACGgaCGGGGGGAAGGGGGGAAAUGGC 172127
                 *******746*********************9988888888877655554.3...366777777777777774458******************** PP

                         NC
                 >>>>>:: CS
  RF01064     94 Gaacgua 100   
                 GA:::  
    chr24 172126 GAGUCGC 172120
                 ******* PP

>>

RNAfold
>chr24_7
GCGACUCGCCAUUUCCCCCCUUCCCCCCGUCCGUCCCUCCCCCUCACAUU
GUUAAGAGGGGGGAGGUGGUGAGAGGGAAGGGGGGAAAUGGCGAGUCGCC
((((((((((((((((((((((((((.((.(((.((.((((((((..........)))))))).))))))).).))))))))))))))))))))))))). (-79.30)

Length sequence

: 100

Length match:

97