chr24_9

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

25.0

E-value:

0.0051

From sequence:

419398

To sequence:

419277

Alignments:

                                     vvv v             v                                             v            NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<<<-<---<<_______________________~~~~~~>>---->>>>>>->>>>>>- CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCAuGaGAUGGaGCUaucAAcaAauugUGAgAaaa*[18]*uCcCuCCCaUGCACUGCcUC 108   
                 A+  G UGA G GA+G::GA  +G :: :GG AG G : G GA  G:G  AU AA AA +++ GA AA+A      :CC  CCC : C CU CC: 
    chr24 419398 AGGGGAUGACGUGAGGAGGAGCAGCGGAGGGGAGGGGGCGCGAGAGCGAAAUGAAAAACGGCAGAUAAGA*[ 8]*GCCACCCCUCCCCCUCCCCU 419301
                 *******************97655555555555558888889999***********88887777766655...7..99977777766655555555 PP

                   v vvv                      NC
                 >>>>>>>->>>::::::::::::::::: CS
  RF00690    109 uUCCCuGGCUCCuuucuCuccucuuUuu 136   
                 :: C    C::C U+C+CUC+UCUU UU
    chr24 419300 CCUC----CCUCGUGCCCUCUUCUUCUU 419277
                 5444....******************** PP

>>

RNAfold
>chr24_9
GUGGAAAAGAAGAAGAGGGCACGAGGGAGGAGGGGAGGGGGAGGGGUGGC
UGGGUCACUCUUAUCUGCCGUUUUUCAUUUCGCUCUCGCGCCCCCUCCCC
UCCGCUGCUCCUCCUCACGUCAUCCCCUACACACU
(((.....((.((.(((((...(((((.((((((((((((((((((((((...)))))))))..................(((....)))))))))))))))).)).))).)))))...)).)).....)))... (-57.90)

Length sequence

: 135

Length match:

120