cmsearch-Rfam

Family :

Id:

Type:

Taxonomy:

Ontology:

Description:

Score:

E-value:

From sequence:

To sequence:

Alignments:

                 :::::::::::::::.....::::::::::::::::::::::::::::::::::::::::::::::::::::::: CS
  RF01975     41 CUaGGUGACGCGCaG.....UCGCCCCCCCAGGCAGCCCaGGcGGCGGCaGcaGCUGCGGcGGCuGCaaggGCaG 110   
                 CU GGUG  GCGC G     U G CCCC CAGGC G  C  Gc GCGGC Gc+GCUGCGGcGGCuGC ++gGC G
    chr25 170617 CUUGGUGGAGCGCUGgaaaaUUGUCCCCACAGGCUGGGCU-GCUGCGGCGGCUGCUGCGGCGGCUGCUGCGGCGG 170690
                 567888888888865333337899*********9987665.5788999999999999999999999998888765 PP



Internal HMM-only pipeline statistics summary: (run for model(s) with zero basepairs)
--------------------------------------------------------------------------------------
Query model(s):                                          1  (125 consensus positions)
Target sequences:                                       34  (57702516 residues searched)
Windows passing local HMM SSV      filter:           39203  (0.1826); expected (0.02)
Windows passing local HMM MSV bias filter:           24763  (0.117); expected (0.02)
Windows passing local HMM Viterbi  filter:            3248  (0.01647); expected (0.001)
Windows passing local HMM Forward  filter:            1657  (0.00931); expected (1e-05)
Total HMM hits reported:                                 1  (1.282e-06)

# CPU time: 8.79u 0.02s 00:00:08.80 Elapsed: 00:00:02.19
//

RNAfold

Length sequence

Length match: