chr25_17

cmsearch-Rfam

Family :

SCARNA7

Id:

RF01295

Type:

Gene; snRNA; snoRNA; scaRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF01295

Description:

not description

Score:

27.7

E-value:

0.0013

From sequence:

158604

To sequence:

158755

Alignments:

                                                                                                                  NC
                 <<<<-----------------------------------------------------------..------------------------------- CS
  RF01295      1 UGGAAAUGAUGAAAUAGAGAUAAUUGGGUGUUGAAUGUUGUaUGAuUGGAAauUUUuAAUAug..UAugUUAAgUAAUucuuauAAgUUuAaugUU 94    
                 UG :AA G  GAA    AG UAA  GG  G   A    UG +  A    AAA+U U AAUA +   A+ U AA  A U +U ++ AG U   U UU
    chr25 158604 UGUGAA-GUAGAAGGGCAGCUAAGCGGCAGAAAAGGAGUGCGAAAAGAAAAAAUGUAAAUACAcaAAACUGAAUGAGUGAUGCAGAGCUGCGUUUU 158698
                 ****87.889999999**********9999766666666666666666677888888888888633444444444555567777777777755554 PP

                                                                              NC
                 ----.-------------------------------------------~~~~~~~>>>>: CS
  RF01295     95 UuaU.aGauacuUaauAGaGuGUGUGUGUGugUGUGUGUGUgcuUgUG*[184]*UCCAA 330   
                 UU U   +U CUU +  G+GUGUGUGUGUGUGUGUGUGUGUG+ UGUG       : CAA
    chr25 158699 UUUUuCUGUGCUUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUG*[  4]*CGCAA 158755
                 444303444555544444444444444444444444444444444444....7..***** PP

>>

RNAfold
>chr25_17
GCAAGUCUAUCCAGUGGAGUUGUGGGGUGCCCCAAAGGCGAAGACGAUAG
CAAAAAGAAGAACGAGAGACGAGAGGACAAGGGGAAAGUGUGAAGUAGAA
GGGCAGCUAAGCGGCAGAAAAGGAGUGCGAAAAGAAAAAAUGUAAAUACA
CAAAACUGAAUGAGUGAUGCAGAGCUGCGUUUUUUUUUCUGUGCUUGUGU
GUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGAUCCCGCAAACGGCUUUCA
CGAGGAUCGCAGUAGCGAUAAUGGUGGCUUCUGAAUGCUGCACGGGAGCA
GAUAGCUGAAGCGCUGAUGAUUCGAUAGU
......((((((((((...(((((((((..(.((.(.(((.(.(((...(((...(.(...(((((..((.((((((...................(((((.((((((..((((((.........)))............(((......)))..(((.....)))..)))..)))))).))))))))))))).)))))...).)...)))...))).).))).).)).)..))))))))).(((((..(((.(..(((((....)))))..).)))(((((((.........)))))))....)))))...))))).......))))). (-78.20)

Length sequence

: 329

Length match:

150