chr25_18

cmsearch-Rfam

Family :

SCARNA7

Id:

RF01295

Type:

Gene; snRNA; snoRNA; scaRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF01295

Description:

not description

Score:

25.7

E-value:

0.0041

From sequence:

636768

To sequence:

636680

Alignments:

                                                                                                                  NC
                 -----------------------------------------------------------------------------------------~~~~~~~ CS
  RF01295     59 AUAugUAugUUAAgUAAUucuuauAAgUUuAaugUUUuaUaGauacuUaauAGaGuGUGUGUGUGugUGUGUGUGUgcuUgUGgaGGCU*[178]* 325   
                 AUAU+UAU+U  A U AU C UAUA GU UA      U    AUA+ UA+  G+GUGUGUGUGUGUGUGUGUGUGUGC UGUG   GCU       
    chr25 636768 AUAUAUAUAUAUAUUUAUACAUAUACGUAUAUAUAAAU----AUAUAUAUAUGUGUGUGUGUGUGUGUGUGUGUGUGCGUGUGUGUGCU*[  4]* 636680
                 88888999988899999999998888887774444444....44455555557777777777777777777777777777777776665....8.. PP

>>

RNAfold
>chr25_18
CUUCUUAUGCAUAACAGCUAGCGGCAUUUUCAUUUGAAAAAGAGAGAAUG
GGCAUGACUCAAAGGACUGCAUCACUGGCAAUUUUUUCGAGUUCAAUGUG
AGAGAUGUUACUCCUCAAAAGGUGAGCACACACACGCACACACACACACA
CACACACACACAUAUAUAUAUAUUUAUAUAUACGUAUAUGUAUAAAUAUA
UAUAUAUAUAUUUAUUUAUUUAUUUAUAUAUACAUAUAUAUGUAUAUAUA
UAUCGAUGUAGGUGUUUUUCUCUGCCAAAUCACCAGAACACUUUCGGUAC
AAAAAUCAUGACGACUGUUUCAUCCCACUG
......(((...(((((...((..(((((((.(((....))).))))))).))..(((((((((((.(((.......))).)))))).))))).....((((.((......))))))....(((.((........)).)))....................(((((((((((((((((((((....))))))))))))))))))))).................(((((((((((....)))))))))))((((((...(((((((((................)))))))))))))))...............))))).)))....... (-70.80)

Length sequence

: 330

Length match:

87