chr25_2

cmsearch-Rfam

Family :

MIR1023

Id:

RF01043

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01043

Description:

not description

Score:

29.2

E-value:

0.0041

From sequence:

138127

To sequence:

138037

Alignments:

                              vv                                               vv              NC
                 <<<<<<<<<<<-<<<<<<<<<<<-<<<<<<<<<<---~~~~~~>>>>>>>>>>->>>>>>>>>>>->>>>>>>>>>> CS
  RF01043     20 CAauUuacuguaCACUCUCUCCgUUUCcCUuCCcaUa*[58]*gGGaAGgGAAUcGGAGAGAGUGuacagugAauUG 148   
                 CA:U::A:UG:+  C:C:C:CC:U:UC:C::C CA +      G G::G:GA: :GG:G:G:    :CA:U::A:UG
    chr25 138127 CACUCCAGUGCC-CCCCCCCCCCUCUCUCCCCGCAGC*[25]*GUGGGGAGAGAGGGGGGGG----GCACUGGAGUG 138037
                 *********995.555556666667777777766554...7..6677777777655555444....8999******* PP

RNAfold
>chr25_2
CAUAAACUCAAAGACAACGAACACGCACCGUCCCCCCACUCCAGUGCCCC
CCCCCUCUCUCCCCACAUAUGCCCAGCGUACCGUUGGGCGGGCUGCGGGG
AGAGAGGGGGGGGGGGGCACUGGAGUGGCAAGGCUGGGGAGAGGCGUGUG
UGGAUGUGGGUGCG
.....(((((.(..((.(..((((((.(..((((((((((((((((((((((((((((((((((.((..(((((((((...)))))))))...)).)))))))))...)))))))))))))))))))).......)))))..))))))))))..).)))))... (-108.40)

Length sequence

: 164

Length match:

89