chr25_3

cmsearch-Rfam

Family :

MIR1151

Id:

RF00926

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00926

Description:

not description

Score:

34.8

E-value:

0.00096

From sequence:

138023

To sequence:

138149

Alignments:

                        v     v                  vvv                   v                                  v       NC
                 <<<<-<<<<<<<<<---<<<<<<<<<-<<<<<<<<<-<<<<<<<<<<<<<<-<<<<<<<-<<<<<<<<<_____>>>>>>>>>->>>>->>>->>> CS
  RF00926      1 gcggagcgugccgcucAccggccgcggcaguccggggcccacaacccguugAcgcgcgcAgcccgcgggcAguccccgcgggccgcgcggcgccaa 96    
                 :C :A:C U:CC:    CC:::C::G ::::C     CCC:C:::C:::::AC:     A :CC::::G+A  CC::::GG:      G :GC:::
    chr25 138023 ACGCACCGUCCCC----CCACUCCAGUGCCCC-----CCCCCUCUCUCCCCACAU----AUGCCCAGCGUA--CCGUUGGGCGG----GCUGCGGG 138099
                 *******999986....766666666555544.....444444555555555554....555555555543..45555555554....34555555 PP

                              vvv                     v      v        NC
                 >>>>>>>>>>>->>>>>>>>>->>>>>>>>>---...>>>>>>->>>->>>> CS
  RF00926     97 cggguugugggAcccggacugAcgcggccggcAu...gcggcaacgcaccgc 145   
                 ::G:::G:GGG    GG::::AC::G:::GGCA    +:GG:A  G: : G:
    chr25 138100 GAGAGAGGGGG--GGGGGGGCACUGGAGUGGCAAggcUGGGGAGAGGCGUGU 138149
                 55555544444..34455555566666666666533347899999******* PP

>>

RNAfold
>chr25_3
CAACGAACACGCACCGUCCCCCCACUCCAGUGCCCCCCCCCUCUCUCCCC
ACAUAUGCCCAGCGUACCGUUGGGCGGGCUGCGGGGAGAGAGGGGGGGGG
GGGCACUGGAGUGGCAAGGCUGGGGAGAGGCGUGUGUGGAUGUG
..(((..((((((((.((((((((((((((((((((((((((((((((((.((..(((((((((...)))))))))...)).)))))))))...)))))))))))))))))))........)))).)).).)))))))..))). (-104.90)

Length sequence

: 144

Length match:

125