chr25_6

cmsearch-Rfam

Family :

mir-214

Id:

RF00660

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00660

Description:

not description

Score:

30.1

E-value:

0.003

From sequence:

148275

To sequence:

148358

Alignments:

                                               v                            v                      NC
                 :<<___>>--------<<<<<<<<<<<<<<<<<<<<<<---<~~~~~~>--->>>>>>>>>>>>>>>>>>>>>>::::::: CS
  RF00660      1 gccauugguuGaaagaGcuGccguguguCuGCCuguCuACAC*[35]*GCACaGacaGGCaGacacacggCagCccauCuu 110   
                 G:  U+ : +  +A   CUG:C:::U:UC: C::::C: CAC      GCA :G::::G :GA:A:::G:CAG C  +C +
    chr25 148275 GGGGUAUCGAUGUAUGGCUGUCUCUUUUCGCCUCCCCCUCAC*[ 9]*GCAAGGGGGAGACGAAAAGAGACAGUCAUACAA 148358
                 *****************************************8...9..99******************************* PP

RNAfold
>chr25_6
UAUGCCUGCAUAGGGGUAUCGAUGUAUGGCUGUCUCUUUUCGCCUCCCCC
UCACACAAGUACAGCAAGGGGGAGACGAAAAGAGACAGUCAUACAAGCAC
AUGUACGGA
.((((((......))))))...((((((((((((((((((((.((((((((..(.........)..)))))))).)))))))))))))))))))).............. (-55.20)

Length sequence

: 109

Length match:

82