chr26_1

cmsearch-Rfam

Family :

HOXA11-AS1_6

Id:

RF02142

Type:

Gene; lncRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0010629 negative regulation of gene expression

Description:

not description

Score:

20.2

E-value:

0.0053

From sequence:

881558

To sequence:

881477

Alignments:

                 ::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CS
  RF02142     45 AgGCCAAAAA.UGUUUuGGAGGAAGAAAAACAAAGGCAGGAAGUGGCgGCgGcCUGACGGUGCGUGUGUGUCUgcGgaGAAGGGAGGGAGc 134   
                   GCC A A  UGUUU  GAG   G  AA CAAA GCAG  A         G  UGAC GUG GUGUGUGU Ug+GgaG AGGG GGG G 
    chr26 881558 CCGCCGAGAGcUGUUU-CGAGAGUGGCAAGCAAACGCAGCCA--------CGUUUGACUGUGUGUGUGUGUGUGUGGAGGAGGGGGGGGGG 881477
                 4567777777566666.6777777888888999888876433........46789999********************9998777766554 PP

>>

RNAfold
>chr26_1
GCCGCACCCACGCACUCCUCGUUUACCACGUUUUCUUUUUCGCAAUACCC
CCCCCCCCUCCUCCACACACACACACACACAGUCAAACGUGGCUGCGUUU
GCUUGCCACUCUCGAAACAGCUCUCGGCGGCGCGUUUACUGUACUUGCAA
CAGGGCCUUUUUCCUUCCCUUGCCUCCUC
...((......))......(((.....)))................................................(((((.(((((((.((((....(((...............))).....))))))))))))))))....(((..((((...........)))))))...... (-26.40)

Length sequence

: 179

Length match:

80