chr26_16

cmsearch-Rfam

Family :

TB6Cs1H4

Id:

RF01548

Type:

Gene; snRNA; snoRNA; HACA-box;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF01548

Description:

not description

Score:

89.6

E-value:

4.3e-19

From sequence:

583855

To sequence:

583930

Alignments:

                                                                                               NC
                 :<<<<<<---------<<<<----<<<<<_...____.________>>>>>------>>>>------>>>>>>:::: CS
  RF01548      1 CgCCuCgucAUUaAAGgUCCCUUGGcggCu...aUAU.cuaUCGAUGccgCUUCACAGGAuACCCAucGaGGcuAGA 73    
                 CGCC:CG CAUU+AAGGUCCCUUGGC:GC+   AUAU C++UCGAUGC:GCUUCACAGGAUACCCA+CG:GGC+AGA
    chr26 583855 CGCCGCG-CAUUCAAGGUCCCUUGGCGGCGauuAUAUaCCCUCGAUGCUGCUUCACAGGAUACCCAGCGUGGCCAGA 583930
                 *******.**********************9999999**************************************** PP

RNAfold
>chr26_16
GCCGCGCAUUCAAGGUCCCUUGGCGGCGAUUAUAUACCCUCGAUGCUGCU
UCACAGGAUACCCAGCGUGGCCAGA
(((((((.......((((...((((((.(((..........))))))))).....)))).....))))))).... (-23.40)

Length sequence

: 75

Length match:

74