chr26_2

cmsearch-Rfam

Family :

Hsp83_3_UTR

Id:

RF02400

Type:

Cis-reg;

Taxonomy:

Eukaryota;

Ontology:

GO:0006417 regulation of translation

Description:

not description

Score:

21.9

E-value:

0.0031

From sequence:

791436

To sequence:

791696

Alignments:

                        v    v              v v                   v          v        v   vvv     vvv          v  NC
                 ,,[[[[[[[[[[[[.[[[[[[[[-[[[[-[[[[[[,,,,,,(((((--((--(((((((((((,,<<<<<<<-<<<-----<<<--<<<.-<<<<< CS
  RF02400    167 UCGuGuGGGauCGc.guCaggacUGaagGaGaGCGAAuCuCaGGGCUCgGUGuGGaGaagGaGguGcCaaGuAGCCCCGUUGCGGAGaG.ugugug 260   
                 U G::UG ::U: : G::A::::UG:A+G ::G        :GG:: C:G G:G::GA:: :G  G :A G:A+++C GUUGC+  G:: U::G :
    chr26 791436 UAGGAUGCUGUGGGgGUGAAAGGUGGAAGCUGGU-------GGGGA-CGGGGGGAGGAGGCGG-AGGGAUGGAAAACGGUUGCACUGGAcUUGGCA 791522
                 ***********87658889999999987766665.......77766.5666666666655555.59999999999999999765555555555555 PP

                          v         vvv      vvv   v                                                     v        NC
                 <~~~~~~>>>>->>->>>->>>------>>>->>>>>>>,,,,<<________________________.__>>,,,,,,,,,,,,)))))))))- CS
  RF02400    261 a*[16]*ucacugcCCuCCCGCuUCCCCGGCCaCuuGgCACUCacuaCCCCCUCCCCUUCCCUUCUCCc.CcguacccccCuCUCUCuCuuuCuCG 365   
                         : C+::C::CC             :C U: C   C::U  C C U CCCUUC CUUCU C    :: ++C +C+C   C: ::UC:: 
    chr26 791523 U*[17]*GUACACACUCCC-------------CCCUCUCUUCCUGUCUCUCAUGCCCUUCUCUUCUACUuUUCAUUUCUUCCCAUGCCCCCUCCUU 791616
                 5...5..344444555554.............4444455555555555555555666666666666666434555555555555555556666665 PP

                     v            v     v       v     v     vv                           v     v       NC
                 ))--))--))))),,,,<<<<-<<_______>>->>>>]]]]]]]]]]-...........]]]]]]]]---]]]-]]]]]-]]]] CS
  RF02400    366 CaucCuCUGCCCuCuCACCGgCGCGccGGGCGCAcCGGCGCuCuuuuCC...........guccuGauUUugCGuguCCCAaCaC 439   
                 C:UC :CU::CC:CUC  :G:CG  CC   C C :C:   C::  U:CC           ::::U::UU  : : G:: CAA::C
    chr26 791617 CCUC-CCUUUCCUCUCUUUGACGAACCUUUCACCUCAU-GCCAC-UCCCuucuauccacuCCUUUCUUU--CACAGCACCAAUCC 791696
                 7765.55669999***************9999999998.56665.55555999****998888887775..5578********** PP

>>

RNAfold
>chr26_2
GCUCUGAUCUCCUCCUGCCGACGUGAUUUCCCUCGCUAGGCGCGAUAGAU
UGGCAGCAACGGGAAAGUCGUCUCUCUUCAUACCCCUUCUGAGGAGAGGC
UUACUAGGAUGCUGUGGGGGUGAAAGGUGGAAGCUGGUGGGGACGGGGGG
AGGAGGCGGAGGGAUGGAAAACGGUUGCACUGGACUUGGCAUCCCCUUCA
CACGCACGAGUACACACUCCCCCCUCUCUUCCUGUCUCUCAUGCCCUUCU
CUUCUACUUUUCAUUUCUUCCCAUGCCCCCUCCUUCCUCCCUUUCCUCUC
UUUGACGAACCUUUCACCUCAUGCCACUCCCUUCUAUCCACUCCUUUCUU
UCACAGCACCAAUCCACGCACAUGCAUGUGCACCGUAUCGUCGUAGCAAA
GGCCCCGCCCUCACCCCAGACCCCUUGCAGGAAGAGAAGUGCUUUGCUAU
CGUGGUGACACGGAGUUGCA
.......((((.((((((................((((.(.((((((((.(((((.....((((((((((((..................(((((((((......((((.((.((((((((((((((((((((..(((((((((((((((((.(((.((.((((((.....((((...)))).......))))))............((((....)))).)))))))))))))))))))...))).....))))))))))))))....))))))))....)))).....))))))))).....)))))..))))).))...))))).))......................................(((((....)))))....))))))).))))...(((...))).................)))))).))))..(((...(((.(((((....)))))))).))) (-147.10)

Length sequence

: 470

Length match:

259