chr26_3

cmsearch-Rfam

Family :

Hsp83_3_UTR

Id:

RF02400

Type:

Cis-reg;

Taxonomy:

Eukaryota;

Ontology:

GO:0006417 regulation of translation

Description:

not description

Score:

25.0

E-value:

0.00033

From sequence:

487689

To sequence:

487876

Alignments:

                                          v                    vv  vv       vv  vv                     v    vv    NC
                 (((((--((--((.(((((((((,,<<<<<<<-<<<-----<<<--<<<-<<~~~~~~->>->>>->>>------>>>->>>>>>.>,,,,<<___ CS
  RF02400    207 aGGGCUCgGUGuG.GaGaagGaGguGcCaaGuAGCCCCGUUGCGGAGaGugu*[24]*ugcCCuCCCGCuUCCCCGGCCaCuuGg.CACUCacuaC 318   
                 : G:CUC:G  UG GAG:::G:GG  ::::G:A:::  GU  : GA             ++C     : U CC C:::C:C:::: CAC C    C
    chr26 487689 GUGUCUCUGCAUGuGAGGGAGGGG--AGGGGAAAGAAAGUGGAUGAUAU---*[45]*GUUCGACUGUUUGCCUCUCUCUCUCCUuCACCC--CUC 487816
                 ************988888888885..56788888888888877666544......8..555544446666777777777776654155555..789 PP

                                        vv                                    NC
                 _______________________>>,,,,,,,,,,,,)))))))))-))--))--))))) CS
  RF02400    319 CCCCUCCCCUUCCCUUCUCCcCcguacccccCuCUCUCuCuuuCuCGCaucCuCUGCCCu 378   
                 CC CUC CCUUC C  CUCCC C+  CC+ C +CUCUC:C:::CUC CAUCC:C G:C :
    chr26 487817 CCUCUCUCCUUCACCCCUCCCUCUCUCCUUCACCUCUCCCUCUCUCCCAUCCACGGACGC 487876
                 99999999999999999999988888888899999999999999999************* PP

>>

RNAfold
>chr26_3
UGCAUUCGCUGUCCGCAUCAUUUUCUCCCUCCCUCCCCAACACCAUAAAC
UCGCACUCCUGGUCAUCUCUCUCUCUCUCUGGUGUGUGCUCUACAGCUGC
GUUGCACCUUUGCUUUUCAGCAAUUACGAGGGGAGAGGGGGUGUCUCUGC
AUGUGAGGGAGGGGAGGGGAAAGAAAGUGGAUGAUAUGAAAGGGACCUUU
GCGCUUCUUCGCCUAUGAUCGGACAUUGUCCUGUUCGACUGUUUGCCUCU
CUCUCUCCUUCACCCCUCCCUCUCUCCUUCACCCCUCCCUCUCUCCUUCA
CCUCUCCCUCUCUCCCAUCCACGGACGCCAUCGCCGAUUUACAGUGACGC
GAGUUAUUCUCGAAGCAAACAAAACUGACUGCAGAACUGCAACGCAGGCA
AGAAGACAUCCGCACGUGAAGGCAGUGCUGCGCUCCCUCGCUUUUCUCCU
CUCCCCACCGGACUCCCUC
..........(((((....................................(((((.((.....................)).)))))........((((((((((..(((((...((((.......((.(((((((((((.(.........(.((((((((((((((((.((..((.((.(((...((.(((((.....(((......)))......(((((((......))))))).........))))).))....))).))))..)).))))))...)))))))))).)..........).))))))))))).))..(((.((....)))))........((...((((.....))))...)).......))))..)))))..))))))))))...((((((.........((((.((.((((...)))))).))))))))))...........)))))...... (-134.60)

Length sequence

: 469

Length match:

186