chr26_4

cmsearch-Rfam

Family :

Hsp83_3_UTR

Id:

RF02400

Type:

Cis-reg;

Taxonomy:

Eukaryota;

Ontology:

GO:0006417 regulation of translation

Description:

not description

Score:

20.3

E-value:

0.0099

From sequence:

832236

To sequence:

832413

Alignments:

                     v       v    v                              v      v                             v    v      NC
                 (((((((((,,<<<<<<<-<<<-----<<<--<<<-<<<<<<----<<<~~~~~~>>>-->>>>->>->>>->>>------>>>->>>>>>>,,,, CS
  RF02400    220 GaGaagGaGguGcCaaGuAGCCCCGUUGCGGAGaGugugugaCCCAugc*[ 4]*gcaCCucacugcCCuCCCGCuUCCCCGGCCaCuuGgCACUC 313   
                 GA : :G::  : ::AG AG       G GG GAG G:G :: C A:G        C:C :: C :CCCUC C C+UC     C  CU:: :ACUC
    chr26 832236 GAGGAUGGAAAAAAGAGUAG-------GGGGCGAGGGGGGAGUCAAAGU*[40]*UCUCUCUUCCCCCCUCUCUCCUCUUU--CUCCUCUGUACUC 832356
                 *******************9.......***************9999986...9..58899999999999999999999987..999********** PP

                                                                     v     NC
                 <<__________________________......>>,,,,,,,,,,,,))))))))) CS
  RF02400    314 acuaCCCCCUCCCCUUCCCUUCUCCcCc......guacccccCuCUCUCuCuuuCuC 364   
                 :C AC C CU CC  U C   C CCC C      G: CCCCCCU UCU::C: : UC
    chr26 832357 UCCACGCUCUACCUCUGCUAACGCCCUCccuacuGAUCCCCCCUUUCUUCCACCUUC 832413
                 *****99999999988888888777744578888*********************** PP

>>

RNAfold
>chr26_4
AGCCCUAUGUGUGUGUGUGCGGCGUACCAAAGCACAGCAACGGUGAUGGG
UGCAAUAGCGGGUGAUCGUUAGCGCACUCCUCCAUUGGUUAGUAAAGGGG
CCGAGGGACGAGGCUGGCCCGGCUUGUUUUGUUUGACGUGCGAAAGAGGA
UGGAAAAAAGAGUAGGGGGCGAGGGGGGAGUCAAAGUGAGCGUCUUGCCA
CUGAAGGUGUGGUGCCGCCGACUCACUUCUCUCUUCCCCCCUCUCUCCUC
UUUCUCCUCUGUACUCUCCACGCUCUACCUCUGCUAACGCCCUCCCUACU
GAUCCCCCCUUUCUUCCACCUUCUCCUGCUUGCGUCAUGAGCCCGCUCGA
CACUUCUACGCGAGCCCUUUUGAGAACUCUUCAGUGGUUUUCGUGGCCUC
GGCGGGAUGGCUGCAGCAUCGCUGACCCCACCUACGGGGGCAGUGACAGC
GCCCUGCCCGUUGUUGCUU
.......(((((.((.((((...))))))..)))))(((((((.(..((((((..(((.(((.(..((((((((...........(((..((((.((((((((..(((((((((.(((...))).)))))))))..)).).(((((((((.........(((.((((((.(((((((((((...(((..(((...((((((.......)))))).)))..))).))))))))))).)))))))))))))))))).))))).))))..)))...........))))))))..).)))..))).........................((((.(((((((...(((((.(((.....(((((.(((((...(((((.....))))).))))).)))))..))))))))))))).))))))((((((.((((......)))).))))))..))))))..))))))))..... (-177.00)

Length sequence

: 469

Length match:

176