chr26_5

cmsearch-Rfam

Family :

MIR1023

Id:

RF01043

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01043

Description:

not description

Score:

33.1

E-value:

0.00041

From sequence:

456113

To sequence:

456012

Alignments:

                                                                  v                v                              NC
                 :::::::::::::<<<<<<<<<<<<<<<<<-<<<<<<<<<<<-<<<<<<<<<<----~~~~~~>>>>>>>>>>->>>>>>>>>>>->>>>>>>>>> CS
  RF01043      1 GCGcAGugGACaCAgCuuGCAauUuacuguaCACUCUCUCCgUUUCcCUuCCcaUaA*[57]*gGGaAGgGAAUcGGAGAGAGUGuacagugAauU 147   
                 GC +  U+GA +C::                C CUCUCUC::U:UC:CU :C: U        :G: AG:GA: ::GAGAGAG GU          
    chr26 456113 GCCUUCUUGAAGCGCU--------------UCUCUCUCUCUCUCUCUCUGUCUGUGU*[22]*AGAGAGAGAGAGAGAGAGAGAGU---------- 456026
                 *************986..............599999999999999999999998764...7..77777777777777777777776.......... PP

                                    NC
                 >>>>>>>::::::::::: CS
  RF01043    148 GCaaGcUUgAuuguUuuG 165   
                      ::UG   +   U 
    chr26 456025 ----GGCUGUAGAGAGUU 456012
                 ....689*********** PP

>>

RNAfold
>chr26_5
CGACCAUACCCCCUCCUCCCCACCCCCUCCCAACUCUCUACAGCCACUCU
CUCUCUCUCUCUCUCUCUCUGUGCGUGAUACCUCACACACACACAGACAG
AGAGAGAGAGAGAGAGAAGCGCUUCAAGAAGGCGCAUAGUGGGCAAUAAC
GCGCUUUCCUUUCCU
.........................................(((...(((((((((((((((((((.((((((.(((..........))).)))))).)))))))))))))))))))...)))....((((((((...((........))))))))))....... (-63.50)

Length sequence

: 165

Length match:

100