chr26_8

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

28.7

E-value:

0.00037

From sequence:

497197

To sequence:

497322

Alignments:

                                          v                   v                                           v       NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<<<-<---<<____________________________________~~~~~>>---->> CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCAuGaGAUGGaGCUaucAAcaAauugUGAgAaaaagaUGgaauUGUU*[5]*uCcCuCCC 96    
                 A   G +GA G GA  G:GA AGG:A:G GG AG G :: +:A   :     +AA+       G G A  +G  G A  UGU      : CC  : 
    chr26 497197 ACCGGAAGAGGCGAAUGGGAGAGGAAUGGGGGAGCGGGGGGGAGUAGCAAGCUAAU-------G-GGAUGUGGCGUAGGUGUA*[6]*UCCC--UU 497283
                 **********************************9999884443322222222222.......2.222223344455555555..5..4444..44 PP

                              v                           NC
                 >>>>->>>>>>->>>>>>>->>>::::::::::::::::: CS
  RF00690     97 aUGCACUGCcUCuUCCCuGGCUCCuuucuCuccucuuUuu 136   
                 :: C CU CC C: :CCU  C:C UUUCU+UC+ CU+UUU
    chr26 497284 CCCCCCUCCCUCU-UCCUCUCCCUUUUCUUUCAGCUCUUU 497322
                 55566******95.5************************* PP

>>

RNAfold
>chr26_8
AUACACCGGAAGAGGCGAAUGGGAGAGGAAUGGGGGAGCGGGGGGGAGUA
GCAAGCUAAUGGGAUGUGGCGUAGGUGUACAAGCGUCCCUUCCCCCCUCC
CUCUUCCUCUCCCUUUUCUUUCAGCUCUUUGUUUA
........((((((..(((.((((((((((.(((((((.(((((((..............(((((((...(((....)))..)))))))))))))))))))))))))))))))......)))..))))))..... (-62.10)

Length sequence

: 135

Length match:

124