chr26_9

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

24.9

E-value:

0.0057

From sequence:

655904

To sequence:

655782

Alignments:

                                                                        v  v        v  v                          NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<....................-<<<<<~~~~~~>>>>>->>>>>>->>>>>>>->>>:::::: CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAG....................aGCAuG*[55]*CaUGCACUGCcUCuUCCCuGGCUCCuuucu 125   
                 +A+ GG  A GAGA++GAGA AG:GA  A    G                      C: :      : :GCAC    UC UC:CU  CUC UU+ +
    chr26 655904 GAACGGGAAAGAGAGAGAGAGAGAGA--AGGGGGuuacuggagagacgacagcg--CGCA*[27]*UCCGCACUCUUUC-UCUCUCUCUCUUUGAA 655793
                 *******9999888888887777777..88888899999999999999886633..3333...7..6679999999887.99************** PP

                             NC
                 ::::::::::: CS
  RF00690    126 CuccucuuUuu 136   
                 C+++++U+U  
    chr26 655792 CAUUCUUCUCA 655782
                 *********** PP

>>

RNAfold
>chr26_9
GGGAUCUGAGAAGAAUGUUCAAAGAGAGAGAGAGAAAGAGUGCGGAGGGC
GGUGGCUGCUACGUGCGGUCAUGUGCGCGCUGUCGUCUCUCCAGUAACCC
CCUUCUCUCUCUCUCUCUCUUUCCCGUUCUUUGUUC
.........((((((((...(((((((((((((((.(((((((((((((((((((((((.(((((....)))))))).))))))))).)))).)))......)))).)))))))))))))))..)))))))).... (-58.60)

Length sequence

: 136

Length match:

121