chr27_1

cmsearch-Rfam

Family :

mir-1224

Id:

RF00942

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00942

Description:

not description

Score:

32.7

E-value:

0.0027

From sequence:

364612

To sequence:

364699

Alignments:

                              v                                            v              NC
                 :<<<<<<----<<<<<<<<<<<<-----------<~~~~~~>----.-->>>>>>>>>>>>---->>>>>>: CS
  RF00942      1 GuGaGGaCUcGGGaGGuGGaGGGUgGcgucgccAG*[21]*CGcuU.CuCCCcCCaCCuCCUCUCuCCuCaG 86    
                 G:GAGG:   G:G :G:GGAGGG G  G+ G+ AG      C CU  C CCCCCC:C: C:UC C:CCUC: 
    chr27 364612 GAGAGGGGGAGAGAAGGGGAGGGAGUGGCAGUGAG*[22]*CACUCcCCCCCCCCCCUCCUUCCCCCCUCUC 364699
                 ***********************988777777664...7..3333304489999999999************ PP

>>

RNAfold
>chr27_1
AGAGGGGGAGAGAAGGGGAGGGAGUGGCAGUGAGGUGAGUCCUUCGAACG
UCUAGUCACUCCCCCCCCCCCCUCCUUCCCCCCUCUC
((((((((.(((.(((((.(((((((((...((.((..(.....)..)).))..))))))))).....))))).))).)))))))). (-47.40)

Length sequence

: 87

Length match:

86