chr27_10

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

34.8

E-value:

5.3e-06

From sequence:

364594

To sequence:

364717

Alignments:

                                                v      v                                                          NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<<<-<---<<_________________________________________>>---->> CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCAuGaGAUGGaGCUaucAAcaAauugUGAgAaaaagaUGgaauUGUUgUuGCuCcCuCCC 96    
                  AU G  G  GAGA++GAGA AGGG::  :G AG G : G+GA  G: C  U      + +GUGAG        G+A  U U GU  C:CCC CCC
    chr27 364594 UAUAGACGCAGAGAGAGAGAGAGGGGGAGAGAAG-GGGAGGGAGUGG-CAGU------GAGGUGAG--UCCUUCGAACGUCUAGUCACUCCCCCCC 364679
                 **********************************.666665887766.2222......22233444..4444566777777777777799977766 PP

                 v      v                                 NC
                 >>>>->>>>>>->>>>>>>->>>::::::::::::::::: CS
  RF00690     97 aUGCACUGCcUCuUCCCuGGCUCCuuucuCuccucuuUuu 136   
                  : C CU C: C::CCCU  CUC UUUCUCU+ U U+U U
    chr27 364680 CCCC-CUCCUUCCCCCCUCUCUC-UUUCUCUUGUGUCUGU 364717
                 6666.*****************8.56789999******** PP

>>

RNAfold
>chr27_10
AGAGAUAUAGACGCAGAGAGAGAGAGAGGGGGAGAGAAGGGGAGGGAGUG
GCAGUGAGGUGAGUCCUUCGAACGUCUAGUCACUCCCCCCCCCCCCUCCU
UCCCCCCUCUCUCUUUCUCUUGUGUCUGUUAGCUG
((....((((((((((((((((((((((((((.(((.(((((.(((((((((...((.((..(.....)..)).))..))))))))).....))))).))).))))))))))))))))).)))))))))...)). (-79.00)

Length sequence

: 135

Length match:

122