chr27_11

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

32.6

E-value:

2.5e-05

From sequence:

364717

To sequence:

364593

Alignments:

                                             v            v                        v           v                  NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<<<-<---<<_______~~~~~~>>---->>>>>>->>>>>>->>>>>>>->>>::::: CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCAuGaGAUGGaGCUaucA*[34]*uCcCuCCCaUGCACUGCcUCuUCCCuGGCUCCuuuc 124   
                 A +   + A GAGA +GAGA AGGG::G :G AG G : G    GG:  U  C       :C CUCCC : C CU C:  ::CCCU  CUC +U +
    chr27 364717 ACAGACACAAGAGAAAGAGAGAGGGGGGAAGGAGGGGGGG--GGGGGAGUGACU*[26]*CCACUCCCUCCC-CUUCUCUCCCCCUCUCUCUCUCU 364605
                 **********************************555555..234444444433...7..888888666666.9999999**************** PP

                              NC
                 :::::::::::: CS
  RF00690    125 uCuccucuuUuu 136   
                 ++ C UCU U+U
    chr27 364604 CUGCGUCUAUAU 364593
                 ************ PP

>>

RNAfold
>chr27_11
UAGAGAUAUAGACGCAGAGAGAGAGAGAGGGGGAGAGAAGGGGAGGGAGU
GGCAGUGAGGUGAGUCCUUCGAACGUCUAGUCACUCCCCCCCCCCCCUCC
UUCCCCCCUCUCUCUUUCUCUUGUGUCUGUUAGCUG
(((....((((((((((((((((((((((((((.(((.(((((.(((((((((...((.((..(.....)..)).))..))))))))).....))))).))).))))))))))))))))).)))))))))...))) (-79.20)

Length sequence

: 136

Length match:

123