chr27_12

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

28.9

E-value:

0.00032

From sequence:

721109

To sequence:

720946

Alignments:

                                 v   v                v v                                               v v       NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<<<-<---<<___________________________~~~~~~>>---->>>>>>->>> CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCAuGaGAUGGaGCUaucAAcaAauugUGAgAaaaagaU*[14]*uCcCuCCCaUGCACUG 104   
                 +A  G  G UGAG    AG  :GGGA:G G: AGAG  : +GAUG:AG    +AA++AA UG GAG +  +G U      U: CUCC :  C CU 
    chr27 721109 GAGCGAGGCUGAGGA-AAGGAGGGGAGGGGAGAGAGGUGGGGAUGAAGAGCAUAAUGAACUGCGAGCGUGUGUU*[44]*UUGCUCCACUUC-CUC 720978
                 ***********9987.5665688888888888887666669*****************9999999987765554...9..665555555555.*** PP

                           v   v                  NC
                 >>>->>>>>>>->>>::::::::::::::::: CS
  RF00690    105 CcUCuUCCCuGGCUCCuuucuCuccucuuUuu 136   
                 :C C:UCCC: GCU CUUUC++U+C+CUU  U
    chr27 720977 CCUCCUCCCUCGCUCCUUUCAUUUCCCUUGGU 720946
                 ******************************** PP

>>

RNAfold
>chr27_12
CCAAGGGAAAUGAAAGGAGCGAGGGAGGAGGGAGGAAGUGGAGCAAAGCG
CCCGUGACGAAGAGAGCGUGGGGAGACGCGAUGACGCCCAAACACACGCU
CGCAGUUCAUUAUGCUCUUCAUCCCCACCUCUCUCCCCUCCCCUCCUUUC
CUCAGCCUCGCUC
...(((.....((((((((.(.(((.(((((((((..(.(((...(((.((..((((.(((..(((((((.......(((....))).......)))))))....))).)))))).)))..))))..)))))))))))).).)))))))).....)))..... (-62.90)

Length sequence

: 163

Length match:

162