chr27_14

cmsearch-Rfam

Family :

MIR529

Id:

RF00908

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00908

Description:

not description

Score:

27.2

E-value:

0.0056

From sequence:

364593

To sequence:

364719

Alignments:

                                                 v                    v                                   NC
                 ::::<<--<--<<-<<<<<<<<<<<<<<-<<<<<<<<<____~~~~~~>>>>>>>>>->>>>>>>>>>>>>>->>-->---->>:::: CS
  RF00908      1 acaUcaAGGCUaaAgGaaGaaGaGaGaGAGuaCaGCcuUaGu*[49]*agGCuGuaCcCuCuCuCuuCuuCcCuuAGCUUCUugauug 131   
                 A+AU::A  C :A : A:::AGAG:G:GA :: AG::: +G+      :::CU :: CC:C:CUCU:::U :CU:    U U:: UU 
    chr27 364593 AUAUAGACGCAGAGAGAGAGAGAGGGGGAGAGAAGGGGAGGG*[46]*CCCCUCCUUCCCCCCUCUCUCUUUCUCU-UGUGUCUGUUA 364719
                 **********9999999999****************998887...6..9999999999999999999999999884.56677****** PP

>>

RNAfold
>chr27_14
GAUAUAGACGCAGAGAGAGAGAGAGGGGGAGAGAAGGGGAGGGAGUGGCA
GUGAGGUGAGUCCUUCGAACGUCUAGUCACUCCCCCCCCCCCCUCCUUCC
CCCCUCUCUCUUUCUCUUGUGUCUGUUAGC
...((((((((((((((((((((((((((.(((.(((((.(((((((((...((.((..(.....)..)).))..))))))))).....))))).))).))))))))))))))))).))))))))).... (-78.90)

Length sequence

: 130

Length match:

125