chr27_15

cmsearch-Rfam

Family :

mir-574

Id:

RF00929

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00929

Description:

not description

Score:

38.4

E-value:

0.0017

From sequence:

154725

To sequence:

154887

Alignments:

                          v                     v               v                   v            NC
                 <<<<<<<<<<<<-<-<<<<<<<<<<<<<<<<<--<<_~~~~~~>>-->>>>>>>>>>>>>>>>>>>>>>>>>>>>>>:: CS
  RF00929      1 cGcGGGCGuGuGAGUGuGuGuGuguGaGuGuGUGuCG*[ 4]*GgUCCaCgCuCaugCaCaCaCCCaCaCGCCCgCgCu 77    
                 ::CG:G:G  UG GUGUGUGUG::UG:G:GU UG::G      ::   AC:C:CA::CACACACCCA  C:C:CG::  
    chr27 154725 GUCGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGCGG*[91]*CGGGAACACACACACACACACCCAAGCACACGAC-A 154887
                 *******************************888765...*..677789***************************7.9 PP

>>

RNAfold
>chr27_15
UCGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGCGGACAUUUCGUUUUUG
CUUUUAUUUUUCUCUCCUCUGUUUUAGCUGCUUGGCACUGUGCCGCCACA
ACAGCGGUGGCGCCGUCGCCCGUAUCUCGGGAACACACACACACACACCC
AAGCACACGACA
((((((((.((.((((((((((((((((..((((.((((....(((...((...................))...))))).)).)))).((((((((.(....).)))))))).....((((.....)))).)))))))))))))))).)).)))))))).. (-69.20)

Length sequence

: 162

Length match:

161