chr27_16

cmsearch-Rfam

Family :

mir-574

Id:

RF00929

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00929

Description:

not description

Score:

35.5

E-value:

0.0074

From sequence:

154891

To sequence:

154729

Alignments:

                  vv    v         v                                          v       v   vv    NC
                 <<<<<<.<<<<<<-<-<<<<<<<<<<<<<<<<<--<~~~~~~>-->>>>>>>>>>>>>>>>>>>>>>>>>>>>>>:: CS
  RF00929      1 cGcGGG.CGuGuGAGUGuGuGuGuguGaGuGuGUGu*[ 7]*gUCCaCgCuCaugCaCaCaCCCaCaCGCCCgCgCu 77    
                 :  G:G  GUGUG :UG GUGUG::UG:G:G GU :      :UCC C:C:CA::CACAC C:CACAC C:C  :C 
    chr27 154891 UUCGUGuCGUGUGCUUGGGUGUGUGUGUGUGUGUUC*[92]*GUCCGCACACACACACACACACACACACACACACA 154729
                 ******66*************************997...*..789******************************** PP

>>

RNAfold
>chr27_16
GUGUGUGUGUGUGUGUGUGUGUGUGUGUGCGGACAUUUCGUUUUUGCUUU
UAUUUUUCUCUCCUCUGUUUUAGCUGCUUGGCACUGUGCCGCCACAACAG
CGGUGGCGCCGUCGCCCGUAUCUCGGGAACACACACACACACACCCAAGC
ACACGACACGAA
((((((((((.((.(((((((((((((((((((...))))................................(((....)))((.((((((((.(....).)))))))).))..((((.....))))..))))))))))))))).)).)))))).))))... (-68.00)

Length sequence

: 162

Length match:

161