chr27_17

cmsearch-Rfam

Family :

mir-577

Id:

RF01013

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01013

Description:

not description

Score:

31.7

E-value:

0.0021

From sequence:

949678

To sequence:

949572

Alignments:

                     v v             v                                        v             v v                NC
                 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.<<<<<___~~~~~~>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>::::::::::: CS
  RF01013      1 uGGGggaguGaaGaGcaGauaaaguauuGgc.aCCuGAUG*[10]*CaGGugcCaauacuuuauCugCuCuuCacuccCCCaUAUcUAcUUAc 96    
                 UG G G : G:A:::::GA: :::::::G:: : C:GA        C:G :::C::::::: :UC:::::U:C : C C CA   CUACU AC
    chr27 949678 UGGGUGUAGGGAAGAGGGAGGGGGGGAAGUGgCUCAGAGA*[20]*CUGGGCACUUUCUCCGCUCCCUCUUCCUUUCCCUCACUCCUACUCAC 949572
                 ****988888888888888888888888886266777654...8..77777788888888888888888888888888*************** PP

RNAfold
>chr27_17
UGAGUAGGAGUGAGGGAAAGGAAGAGGGAGCGGAGAAAGUGCCCAGAAGC
UAUGUCGUCUCCCUCCUCUCUGAGCCACUUCCCCCCCUCCCUCUUCCCUA
CACCCA
......((.((((((((.....((((((((.((.(.((((((.((((.....................)))).).))))).).)).))))))))))))).))))). (-38.30)

Length sequence

: 106

Length match:

105