chr27_18

cmsearch-Rfam

Family :

mir-639

Id:

RF01031

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01031

Description:

not description

Score:

34.8

E-value:

0.0066

From sequence:

821419

To sequence:

821514

Alignments:

                                      v         v       vvv        vvv        v       v                           NC
                 ::<<<--<<-<<<<<-<<<<<<<<----<-<<-<<<<<<<<<<______>>>>>>->>>>->>->-->>>>>>>>->>>>>->>>>>::::::::: CS
  RF01031      1 UGgccGgcgGgGCGCgCGcggCcgGGAGGGGcGgGgCggaCgcagAGCcgcGucuAGuCcagCGCaGcgGucgCGAGCGCcucgggcauCcugugc 96    
                  G:::G+::G:G G:G G:G: :G G GGGG GGGGC :   CA A   G G : AGUCC  CGCAGC: :C:C  :C C: :::::  CC  UGC
    chr27 821419 GGCGAGAGAGAGAGAGAGAGAGAGAGGGGGGGGGGGCUGG-ACAAAAAGGCGGUGAGUCCCACGCAGCUGUCUCUCUCUCUCUCUCGC-CCGCUGC 821512
                 *************************************987.55555555667899*******************************95.67889** PP

                    NC
                 :: CS
  RF01031     97 ug 98    
                  G
    chr27 821513 GG 821514
                 ** PP

RNAfold
>chr27_18
GGCGAGAGAGAGAGAGAGAGAGAGAGGGGGGGGGGGCUGGACAAAAAGGC
GGUGAGUCCCACGCAGCUGUCUCUCUCUCUCUCUCGCCCGCUGCGGC
((((.(.((((((((((((((((.((..(.(.((((((.(.(........).).)))))).).)..)).)))))))))))))))).).))))..... (-54.60)

Length sequence

: 97

Length match:

94