chr27_2

cmsearch-Rfam

Family :

mir-1224

Id:

RF00942

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00942

Description:

not description

Score:

35.5

E-value:

0.00053

From sequence:

364695

To sequence:

364615

Alignments:

                                       v             v                 v        v                       NC
                 :<<<<<<----<<<<<<<<<<<<-----------<<<<_______________>>>>------>>>>>>>>>>>>---->>>>>>: CS
  RF00942      1 GuGaGGaCUcGGGaGGuGGaGGGUgGcgucgccAGggCcaGgGcgcuGUCUcAGccCGcuUCuCCCcCCaCCuCCUCUCuCCuCaG 86    
                 G:G:GGA   G:G:GG GG: G  GG GU +C+AG: :+  G     G CUCA: :C CU C +C :CC CC:C:UCUCUCC:C: 
    chr27 364695 GGGGGGAAG-GAGGGGGGGGGG--GGAGUGACUAGACGUUCGA--AGGACUCACCUCACUGCCACUCCCUCCCCUUCUCUCCCCCU 364615
                 *******65.455555555555..578899999*****77644..56899*************999999***************** PP

>>

RNAfold
>chr27_2
AGAGGGGGAGAGAAGGGGAGGGAGUGGCAGUGAGGUGAGUCCUUCGAACG
UCUAGUCACUCCCCCCCCCCCCUCCUUCCCCCCUCU
((((((((.(((.(((((.(((((((((...((.((..(.....)..)).))..))))))))).....))))).))).)))))))) (-46.90)

Length sequence

: 86

Length match:

79