chr27_20

cmsearch-Rfam

Family :

RUF21

Id:

RF01825

Type:

Gene;

Taxonomy:

Eukaryota;

Ontology:

Not found

Description:

not description

Score:

32.5

E-value:

0.0087

From sequence:

1019333

To sequence:

1019252

Alignments:

                                           vv                                                      vv    NC
                  ,,,,,,,,,,,,,,,,,,,,,,<<<<<<------<<<<<<<__________________________>>>>>>>------>>>>>> CS
  RF01825     562 UCAauAgCUuGAAAGGgUAAAGguaGUUAAGAUAgUAUAUaCAUAUAuAUgUACAUAUAcAUAuAuAuAUAUAcAuaUUGAAUuac 647    
                  UCA+U GC   A A G U AAG::A  :AA AUA:UAUAUA AUAUAUAU+UA AUAUA+AU  AUAUAUAUA:AU UU :+ U::
    chr27 1019333 UCAUUGGCAACAUAUGAUGAAGACA--CAAAAUAGUAUAUAUAUAUAUAUAUAUAUAUAUAU--AUAUAUAUAUAUGUUUGUGUGU 1019252
                  **********************998..6999*********9888887777777666666665..5557777777777777789*** PP

RNAfold
>chr27_20
GUACAUCCGUUACUUCUAGUGCACGCGUACUUUGACAUGUCUAGCGUAGA
GGUCUUCGUGAACGAAGGUGAGGCUGUGCUGAGUACCCGCAUUUAUCCGG
CGCGCAAGGAUCGGGCGCUUUCUCUCUUUGCAGUCAACGGCACCGCCCAC
AUUAUGCAAGGCGACAUUUGGGCGUUGAACCAGGCAGUUAUGCAGUAGUA
UUUCUUCGAGCAGCUUUAACAUGAUAGCACGGCAGAAAGGAUACGAAAAA
UAUCAACAAUUUUUGAGAAAAUGAGGACUCUGAAGCAAGGCGAGCAAGAA
CACACACACAAACAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUA
UACUAUUUUGUGUCUUCAUCAUAUGUUGCCAAUGAAAUAGGAGAACGACA
UAAUAAACGAGCUGAGGUCGUUUAUUGGGCUGUACUGCCCAUGUAAUAUU
UUCUUUUCCCUCUUUUUUUUUUUCUUCACUCCCGCUCCGAGCUUCCUCUC
CUGUGAGGCGGAUACGCACACCAACGCCUCUCUUUCUUUUUUUCCUGUUA
CAUUUUUAUCCCUGUCACCCUCAUUCAACACAAUACCUGUGAAACAGAAU
GACAUCACACACACAAAAAAAAAAAAUAAAAAGAACGAUAGUCUUUGGAG
CACGCUGCUUUACUCUUCCUUGCACUUGUUUUUUCUCCA
...........(((((((.(((..((((........))))...))))))))))(((((....)))))(((.(((.((((((...((..(((.......(((((.(.......).))))).........))).))...)))))).))))))....(((((((........((((((((......(((....)))....((((((.(((..((.(((..........)))...)).))).))))))........((((......))))......((((((((.((.((..((.(((.(((((.....(((((((.(((((((((((((((((((....)))))))))))))))).))))))))))........(((((((((.........))....)))))))((((((((.(...).))))))))(((((......)))))..............................)))))..))))))))).)))..)))))....(((..(((....))).))))))))))).((.((((((((...........(((((.....(((.....((((((..((((.....)))).....))))))....))).....)))))........)))))))).)).......(((((((...))))))).....)))))))............... (-161.90)

Length sequence

: 689

Length match:

80