chr27_21

cmsearch-Rfam

Family :

SCARNA7

Id:

RF01295

Type:

Gene; snRNA; snoRNA; scaRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF01295

Description:

not description

Score:

29.6

E-value:

0.00043

From sequence:

250858

To sequence:

250706

Alignments:

                                                                                                                  NC
                 <<<<-------------------------------------------------------------------------------------------- CS
  RF01295      1 UGGAAAUGAUGAAAUAGAGAUAAUUGGGUGUUGAAUGUUGUaUGAuUGGAAauUUUuAAUAugUAugUUAAgUAAUucuuauAAgUUuAaugUUUu 96    
                  :GAAA  A G  AU  A   A  UGG     GAA G    AUG     A A+       A GUAUG   AG AAUU+  A+ A    AAU+UUU 
    chr27 250858 GGGAAAAAAAGGGAUCAA-CGAGAUGGAACGAGAAAGACACAUGCAACAACAA-CCACUAAAGUAUGCACAGAAAUUUCGAAUAAGGGAAUAUUUA 250765
                 *****9988888877655.4466678888899************996555554.445555667999999********9999999************ PP

                                                                              NC
                 ------------------------------------------------~~~~~~~>>>>: CS
  RF01295     97 aUaGauacuUaauAGaGuGUGUGUGUGugUGUGUGUGUgcuUgUGgaG*[181]*UCCAA 330   
                 AU GAUAC U +  G GUGUG GUGUGU+UGUGUGUGUG+ UGUG          UC: A
    chr27 250764 AUGGAUACAUGUGUGCGUGUGCGUGUGUAUGUGUGUGUGUGUGUGUCU*[  6]*UCUCA 250706
                 ***************************************999998765....8..***** PP

>>

RNAfold
>chr27_21
CGCAUCAAGAUCAUUAUUCUUGCUCCUGGUGCAGUUCUCUGUGUUUCUCU
GGUAUGGUUGUUGCUGUUUACUUAGGUACUCAGACAGGUGAGAUCACACA
GACACACACACACACACAUACACACGCACACGCACACAUGUAUCCAUUAA
AUAUUCCCUUAUUCGAAAUUUCUGUGCAUACUUUAGUGGUUGUUGUUGCA
UGUGUCUUUCUCGUUCCAUCUCGUUGAUCCCUUUUUUUCCCCUUUCAGAU
CCUCCUCUUGAUUGUGUUUCUCUCCCCUCCCCCUCCUUCGUUGCGUUACA
CUAAUCGCGUUGUUAUUCCUCUGCUUUCAG
.....(((((.......)))))...((((.((((...((((.((.(((..((((.(((....)))...)))).))).)).))))..((.((((..(((((((((((..((.(((.(((..(((........(((((...((.((...(((........)))...)).))...)))))........)))..))))))))..)))))).....((........))..((((..................))))...........))))).)))).)).............((.((((..........)))).))........))))..)))) (-59.00)

Length sequence

: 330

Length match:

151