cmsearch-Rfam

Family :

Id:

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Taxonomy:

Ontology:

Description:

Score:

E-value:

From sequence:

To sequence:

Alignments:

                 :::::::::::::::::::::::::::: CS
  RF01124      3 GGAUGAuGaGAGGGUAGGUgGCUGAGcg 30    
                 GGAUGA+GaGAGGGUAGG +GCUGAGc 
    chr27 405039 GGAUGAAGAGAGGGUAGGAAGCUGAGCA 405066
                 89***********************975 PP



Internal HMM-only pipeline statistics summary: (run for model(s) with zero basepairs)
--------------------------------------------------------------------------------------
Query model(s):                                          1  (55 consensus positions)
Target sequences:                                       34  (57702516 residues searched)
Windows passing local HMM SSV      filter:            7359  (0.01852); expected (0.02)
Windows passing local HMM MSV bias filter:            4763  (0.01196); expected (0.02)
Windows passing local HMM Viterbi  filter:             621  (0.001536); expected (0.001)
Windows passing local HMM Forward  filter:              37  (0.0001073); expected (1e-05)
Total HMM hits reported:                                 1  (4.852e-07)

# CPU time: 0.91u 0.01s 00:00:00.92 Elapsed: 00:00:00.21
//

RNAfold

Length sequence

Length match: