chr27_28

cmsearch-Rfam

Family :

TB11Cs4H2

Id:

RF01540

Type:

Gene; snRNA; snoRNA; HACA-box;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF01540

Description:

not description

Score:

84.0

E-value:

1.2e-17

From sequence:

384097

To sequence:

384161

Alignments:

                                                                                   NC
                 ::<<<<-<-------<<<<<<<<<<<___.______>>>>>->>>>>>------->->>>>:::: CS
  RF01540      1 AAGGaGUGCaUUGAGuCCCACCGCccCcC.AccagUggGCGcGUGGGaGCAUCAgCuCuCCGAGA 64    
                 AAGGAGUGCAUUGAGUCC:ACCGC:CCCC AC+A UG:GCGCGU:GGAGCAUCA+CUCUCCGAGA
    chr27 384097 AAGGAGUGCAUUGAGUCCUACCGCUCCCCcACUACUGAGCGCGUGGGAGCAUCAACUCUCCGAGA 384161
                 **************************9989*********************************** PP

RNAfold
>chr27_28
AGGAGUGCAUUGAGUCCUACCGCUCCCCCACUACUGAGCGCGUGGGAGCA
UCAACUCUCCGAGA
.((((.(..((((((((((((((((..........))))).)))))).).))))).)))).... (-23.10)

Length sequence

: 64

Length match:

63