chr27_3

cmsearch-Rfam

Family :

mir-1249

Id:

RF01918

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01918

Description:

not description

Score:

28.8

E-value:

0.0023

From sequence:

949690

To sequence:

949568

Alignments:

                                 v                                                      v                    NC
                 :::::::::::<<<-<<--<<<<<<<<<<<-<<-<<-<<<<~~~~~~>>>>->>->>>>>>>>>>>->>-->>->>>:::::::::::::: CS
  RF01918      1 CUCAGAUUaUUGuugGCAUGGGgaGgaGGGAGGAGaUGGGC*[21]*GCCCUuCCCCCCCucCucCACCUgGCGaaCUCCUACUCGUCCUU 106   
                  U   A   U GU:GG  U: GGA:GAGGGA G G: G::        ::CU:C C CCCUC:UCC  :U  C :ACUCCUACUC   C  
    chr27 949690 UUUGUAGGGUAGUGGGUGUAGGGAAGAGGGAGGGGGGGAAG*[39]*UUUCUCCGCUCCCUCUUCC-UUUCCCUCACUCCUACUCACACCC 949568
                 *********************************99988753...9..689****************.77888******************* PP

>>

RNAfold
>chr27_3
GGUGUGAGUAGGAGUGAGGGAAAGGAAGAGGGAGCGGAGAAAGUGCCCAG
AAGCUAUGUCGUCUCCCUCCUCUCUGAGCCACUUCCCCCCCUCCCUCUUC
CCUACACCCACUACCCUACAAA
.......(((((((((.((....(((((((((((.((.(.((((((.((((.....................)))).).))))).).)).))))))))))).....))))))..)))))... (-45.90)

Length sequence

: 122

Length match:

121