chr27_5

cmsearch-Rfam

Family :

MIR2118

Id:

RF01911

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01911

Description:

not description

Score:

33.8

E-value:

0.001

From sequence:

364721

To sequence:

364590

Alignments:

                           v                     v                                   v                    v       NC
                 ::::::::<<<<<-<<<---<<<--<<<<<<<<<<-<<<<<<<<<<<-~~~~~~>>>>>>>>>>>->>>>>>>>>>-->>>->>>.->>>>>:::: CS
  RF01911      1 guuaGgaAGaagaAGaaaGAGAGguccugaGAgcggUaGGaAUGGGaA*[76]*uCCCAUuCCuAucguUCucaggugCUCCuuC.CucuuCCUUu 165   
                 G UA  A+:: :AAGA:A+AGAG+ :::G:G  :GG :GG:  GG :       : CC  :CC: UC:  C:C:::  CUC :UC CU: ::CU U
    chr27 364721 GCUAACAGACACAAGAGAAAGAGAGAGGGGGGAAGGAGGGGGGGGGGG*[37]*CUCCCUCCCCUUCUCUCCCCCUCUCUCUCUCuCUGCGUCUAU 364595
                 ************************999999999999999998888664...7..667778888889999999999999999999989********* PP

                       NC
                 ::::: CS
  RF01911    166 uaguU 170   
                 ++ U 
    chr27 364594 AUCUC 364590
                 ***** PP

>>

RNAfold
>chr27_5
AUGACUCGUACCAUCUUAGAGAUAUAGACGCAGAGAGAGAGAGAGGGGGA
GAGAAGGGGAGGGAGUGGCAGUGAGGUGAGUCCUUCGAACGUCUAGUCAC
UCCCCCCCCCCCCUCCUUCCCCCCUCUCUCUUUCUCUUGUGUCUGUUAGC
UGUAGCUGUAUGUCAUCUA
(((((..((((.....(((....((((((((((((((((((((((((((.(((.(((((.(((((((((...((.((..(.....)..)).))..))))))))).....))))).))).))))))))))))))))).)))))))))...))).....)))))))))... (-86.50)

Length sequence

: 169

Length match:

130