chr28_1

cmsearch-Rfam

Family :

Hsp83_3_UTR

Id:

RF02400

Type:

Cis-reg;

Taxonomy:

Eukaryota;

Ontology:

GO:0006417 regulation of translation

Description:

not description

Score:

20.3

E-value:

0.0099

From sequence:

470212

To sequence:

470064

Alignments:

                            vv                     v                           v                     vv           NC
                 ((((((,,<<<<<<<-<<<-----<<<--<<<-<<<<<<----<<<~~~~~~>>>-->>>>->>->>>->>>------>>>->>>>>>>,,,,<<_ CS
  RF02400    223 aagGaGguGcCaaGuAGCCCCGUUGCGGAGaGugugugaCCCAugc*[ 4]*gcaCCucacugcCCuCCCGCuUCCCCGGCCaCuuGgCACUCacu 316   
                 :::G:GG  :   ::AG :  G  G:GGAG:G   G:G  CCA: C      G : C C:CU  CC:CCC:C+UC C : C ::   :  C     
    chr28 470212 GGGGGGGGGGUUAACAGGGGAGAAGGGGAGCGAGUGGGGACCAGGC*[27]*GUCUCUCCCUCUCCGCCCCCCUCUCUCUCUGUGUGCUCC----- 470101
                 8888888899999*******************88888888888776...*..67889**************************99888855..... PP

                                                               NC
                 _________________________>>,,,,,,,,,,,,)))))) CS
  RF02400    317 aCCCCCUCCCCUUCCCUUCUCCcCcguacccccCuCUCUCuCuuu 361   
                      CUC   UU CCUUCU CCC    +C  + U U UC:C:::
    chr28 470100 ----UCUCGUAUUUCCUUCUUCCCU--UUC--UUUAUUUCCCCCC 470064
                 ....568999999999999998876..443..6677788888888 PP

>>

RNAfold
>chr28_1
CUCUACACUUCGUCUUCGCUUCCUCCAGCCAUUAACCCUCAUCCACUCCC
CCCUCCUCCUUUGCUUCUGUUGCCUUUUCCUCCCUACCCCCUGUCCUCCU
CAGUUUGACAGCUCCACAUAUCACGGCGGGCAACGCCUCUCGUUCUCCUG
CUCUUUUUGUGGGGGGAAAUAAAGAAAGGGAAGAAGGAAAUACGAGAGGA
GCACACAGAGAGAGAGGGGGGCGGAGAGGGAGAGACACACUCACAACAGC
ACUAAAAAUCGCUGCCUGGUCCCCACUCGCUCCCCUUCUCCCCUGUUAAC
CCCCCCCCCUCUCGCGCUGCUCUUCGUUUCGUCUUGUAUUUUUUUUAGCG
UUUGCUCGUUUGACGGGCUUCAGGUUUUUGUGUUAUCGCCGUUGGCGUGC
UCUGCAUCUCAUCUUCGGCGCGUUUUGAUGGUGGUGAGGAGGAGGAGGGG
GGGUGCGGUGUAGGUGGCCG
...........................((((.....((((((((((.(((((((((((((((.(((((....(((((((.......(((((((((...........)))))..(((((......((((((.((((.....))))..)))))).....))))))))).......))))))).)))))((((((((((((((((...(((.(.((((((((((.((((((((((.((........((.((((..........))))..))........)).)))))..)))))............)))))))))).).)))......))))).)))))))))))....(((....((((((...)))))).....)))......(((((((((((((((((((...............))))))))..))))))))))))))))))))))))))))).)))).))))))).. (-174.80)

Length sequence

: 470

Length match:

147