chr28_10

cmsearch-Rfam

Family :

MIR535

Id:

RF00714

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00714

Description:

not description

Score:

30.2

E-value:

0.00072

From sequence:

1081790

To sequence:

1081706

Alignments:

                             v                                          v              NC
                  ::::::::::<<<<<<<<-<<<<<<<<<<<~~~~~~>>>>>>>>>>>->>>>>>>>:::::::::::: CS
  RF00714       1 cauaaUUgguUGACaaCGAgAGagAGCACG*[40]*CGUGCUcuCUcUCGuuGUCAuucaauuuuaua 102    
                  ++U A  GG   :CA:CGAGAG:G::CACG      CGUG::C:CUCUCG:UG:   UC  UU U + 
    chr28 1081790 UUUUACCGGCACGCACCGAGAGGGCACACG*[23]*CGUGUGCCCUCUCGGUGCCUCUCUUUUCUUCU 1081706
                  *****************************9...9..9******************************* PP

>>

RNAfold
>chr28_10
CACAGGAAAGAAGAAAAGAGAGGCACCGAGAGGGCACACGCACACACAAG
CGGGGGGGGACGCCGUGUGCCCUCUCGGUGCGUGCCGGUAAAAGUUAAUA
GG
.................(..(.((((((((((((((((((.........(((........))))))))))))))))))))).)..)................ (-43.80)

Length sequence

: 102

Length match:

83