chr28_11

cmsearch-Rfam

Family :

mir-574

Id:

RF00929

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00929

Description:

not description

Score:

38.6

E-value:

0.0015

From sequence:

575385

To sequence:

575498

Alignments:

                              v         v                         v        v               NC
                 <<<<<<<<<<<<-<-<<<<<<<<<<<<<<<<<--~~~~~~->>>>>>>>>>>>>>>>>>>>>>>>>>>>>>:: CS
  RF00929      1 cGcGGGCGuGuGAGUGuGuGuGuguGaGuGuGUG*[10]*CCaCgCuCaugCaCaCaCCCaCaCGCCCgCgCu 77    
                 :GCG:G:GU UG  UGUGUGU : UG G:GU U       C AC:C CA : ACACAC CA AC:C:CGC:C 
    chr28 575385 UGCGUGUGUGUG--UGUGUGUUUGUGUGUGUGUU*[49]*CUACACGCAGAGACACACGCAUACACACGCACA 575498
                 ***********9..69999999999999988876...9..58999999999999999989************* PP

>>

RNAfold
>chr28_11
GCGUGUGUGUGUGUGUGUUUGUGUGUGUGUUGGUCCAUGAUGAUGUUGCU
CUCCAUCUACUCACCUACCGAUGUCUACUGCUACACGCAGAGACACACGC
AUACACACGCACA
((((((((((((((((((((.(((((((((((((...(((.((((........))))...)))...))))))..........))))))).))))))))))))))))))))... (-54.90)

Length sequence

: 113

Length match:

112