chr28_13

cmsearch-Rfam

Family :

mir-621

Id:

RF02008

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF02008

Description:

not description

Score:

33.8

E-value:

0.0004

From sequence:

523046

To sequence:

523140

Alignments:

                                                                                                      NC
                 ::::::::<<<<<<<<<-<<<-<<<<<<<<-<<-<<<<<-<<~~~~~~>>.>>>>>->>->>>>>>>>>>>->>>>>>--->>> CS
  RF02008      1 uAGAUUGAGGaaGgGgCUgagUGGuagGcgGuGcuGCugUGC*[19]*GC.caGCaACaGcgCcuaCCcucUGcCcCuGGGuCC 96    
                  AG   G G::AG::GC G:: G::A:GCGGU:C:GC:GUGC      GC C:GC: :A CGC:U::C::C GC::CU  G::C
    chr28 523046 GAGGCGGGGUGAGCAGCGGUA-GACACGCGGUCCAGCCGUGC*[18]*GCaCGGCUGGACCGCGUGUCUACCGCUGCUUCGCAC 523140
                 *********************.*****************866...8..555********************************* PP

RNAfold
>chr28_13
GAGGCGGGGUGAGCAGCGGUAGACACGCGGUCCAGCCGUGCGCCGACCCA
GUCAUCCCAGCACGGCUGGACCGCGUGUCUACCGCUGCUUCGCACC
.....((.(((((((((((((((((((((((((((((((((...((........))...))))))))))))))))))))))))))))).)))).)) (-75.30)

Length sequence

: 96

Length match:

93