chr28_15

cmsearch-Rfam

Family :

SCARNA7

Id:

RF01295

Type:

Gene; snRNA; snoRNA; scaRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF01295

Description:

not description

Score:

26.0

E-value:

0.0035

From sequence:

546234

To sequence:

546395

Alignments:

                                                                                                                  NC
                 <<<<-------------------------------------------------------------------------------------------- CS
  RF01295      1 UGGAAAUGAUGAAAUAGAGAUAAUUGGGUGUUGAAUGUUGUaUGAuUGGAAauUUUuAAUAugUAugUUAAgUAAUucuuauAAgUUuAaugUUUu 96    
                 U GAAAU A G AA   AGA            GA  GU             A UUU  A A + A+G U  G AA  +UU U     UA UGUUUU
    chr28 546234 UUGAAAUAACGCAAAGAAGAAC----------GAUCGU-------------ACUUUGCAAAAUAAAG-UUGGCAACAUUUUUC--GCUACUGUUUU 546303
                 ***********99987776642..........333333.............2223333333333333.333444444333333..33444555444 PP

                                                                                    NC
                 ---------------------------------------.--------------~~~~~~~>>>>: CS
  RF01295     97 aUaGauacuUaauAGaGuGUGUGUGUGugUGUGUGUGUg.cuUgUGgaGGCUAu*[176]*UCCAA 330   
                  U G     U +  G+GUGUGUGUGUGUGUGUGUGUGUG CUU UGGAGG U U       UC AA
    chr28 546304 UUCGU---GUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGuCUUUUGGAGGUUUU*[ 36]*UCAAA 546395
                 44332...2333335555555555555555555555555567778888887765....9..***** PP

>>

RNAfold
>chr28_15
UCUCCGCAAGUGGGAGUGUCACCUUUGUUGAGCUGCAUGUGUUAGUCUGU
CGGUCUGUGUGUGUAUCUGCAGGCAGUGCAUUCUUGAAAUAACGCAAAGA
AGAACGAUCGUACUUUGCAAAAUAAAGUUGGCAACAUUUUUCGCUACUGU
UUUUUCGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUCUUUUGGAGG
UUUUCGCUGCGAGGUUUGCGCCGUUCUCCUUCCUCAGCCUUCAAAUCAAC
AGGCACUUUUUUGGACUCUCUUCGUUUGUCUAUGCGCCAGCGGUGGAACC
UCUUCUUGUCCGUGUGUCUGCCUUAAGGA
..(((......((.(((((((.(((((((..((....(((((((.((.....((((((.(((......))).)))).))......))..)))))))..((((.((....)).))))))..))))))).)))))((((....((((((((......)).))).)))...))))........((((.(((....((((((((((......(.((((..........)))))......))))))))))...))).)))).....(((((...........))))).((((..((((.((((....))))...)))))))))).))....))) (-75.70)

Length sequence

: 329

Length match:

160