chr28_2

cmsearch-Rfam

Family :

mir-1251

Id:

RF01938

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01938

Description:

not description

Score:

29.6

E-value:

0.0025

From sequence:

128412

To sequence:

128330

Alignments:

                               v                   v               v                  v                NC
                 :::::::::<<<-<<-<<-<<<.<---<<<<<<<<<-<<_____>>--->>>>>>>>>--->>>>->>->>--->>>:::::::: CS
  RF01938      1 GUCAGCUAUguGGaCUCuAGCu.GCCAaagGCGCuuCuCCUUCUGaACagaGCGCuuuGCUCaGCCaGUGuAGACauGGCCUGAU 84    
                   CAGC AUG:GG:  C:AGC   C  ::::C:C :CUC U   GAACA: G:G::::GC   GC :GU :A AC:U GCC G  
    chr28 128412 ACCAGCCAUGCGGCAGCCAGCGcGCAGCGGCCCCUUCUCUU--CGAACAACGGGGCCGGCGUUGCUGGUCGACACGUAGCCGGGG 128330
                 *********************93466699999999999855..49999999999999999999********************** PP

RNAfold
>chr28_2
CCCCGGCUACGUGUCGACCAGCAACGCCGGCCCCGUUGUUCGAAGAGAAG
GGGCCGCUGCGCGCUGGCUGCCGCAUGGCUGGUG
..(((((((.(((.((.(((((..((((((((((.((.((....)).)))))))))..))).))))).)).))).))))))).. (-42.90)

Length sequence

: 84

Length match:

81