chr28_3

cmsearch-Rfam

Family :

mir-1280

Id:

RF02013

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF02013

Description:

not description

Score:

34.2

E-value:

0.0061

From sequence:

241290

To sequence:

241381

Alignments:

                                         v                     v      v                      v                    NC
                 ::<<<<<<<<<-<..-<<<<---<<<--<<<<<<<<-<<<-<--<<<<____>>->>-->->>>->>>>>>>>-->>>>>>>>>>>>>>>>>:::: CS
  RF02013      1 ucuGucccaccGc..UGccacccuccccccuGccucAGuGUGccaGGcAUcAgCACucACUCaCAgaggCaggcUggauggCgggugggaCaAcAG 94    
                  C  : :C: CG:  U:CC:C C: C CCC:::C:C G::U: C: +C UCAG   : A:U::C G:G:::GG  G ::GG::G :G: :  A  G
    chr28 241290 CCUUCUUCCUCGUuuUCCCUCUCCCCUCCCCCUCCCCGCCUCACG-UCUUCAG---CGAGUGGCGGGGAGGGGGGGAGAGGGAGGGGAGGGGAGGG 241381
                 ***********96337**************************998.5677776...789************************************* PP

RNAfold
>chr28_3
CCUUCUUCCUCGUUUUCCCUCUCCCCUCCCCCUCCCCGCCUCACGUCUUC
AGCGAGUGGCGGGGAGGGGGGGAGAGGGAGGGGAGGGGAGGGG
((((((.((((.((((((((((((((...(((((((((((.(.(((.....))).).))))))))))))))))))))))))))))))))))). (-71.00)

Length sequence

: 93

Length match:

90