chr28_4

cmsearch-Rfam

Family :

mir-204

Id:

RF00646

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00646

Description:

not description

Score:

25.3

E-value:

0.0091

From sequence:

215897

To sequence:

216000

Alignments:

                              v         vv                                                             vv         NC
                 :::::::::::::<<<<<---<<<<<-<<<<<<<<<--<<<<<-<<<<___...__________>>>>>>>>>-->>>>>>>>>->>>>>--->>> CS
  RF00646      1 uucaucuaaucaUguGACuUgUGggCUuCCCUUUGuCAUCCuuUGCCugGa...gaUaugAauggGGCagGGAcagCAAAGGGauGcuCAguuGUC 93    
                 +   +   +UC   :GACU G:   CU: CCU:: :C :CCU:   CU G    + U UG +UGGG  :GGG: +: ::AGG : G   :++ GUC
    chr28 215897 ACAGCAGUUUCUCCCGACUAGGCCUCUUUCCUCCCCCUUCCUCCCUCUCGUgugUGUGUGUGUGGGGGGGGGGGGGGGGAGGGGGGU-GCACAGUC 215991
                 ***********************************************98876667788888888******************99666.69****** PP

                  v        NC
                 >>::::::: CS
  RF00646     94 accucuuac 102   
                 : CU+ U  
    chr28 215992 GUCUUGUUU 216000
                 ********* PP

RNAfold
>chr28_4
CAGCAGUUUCUCCCGACUAGGCCUCUUUCCUCCCCCUUCCUCCCUCUCGU
GUGUGUGUGUGUGGGGGGGGGGGGGGGGAGGGGGGUGCACAGUCGUCUUG
UUU
.............(((((..((((((((((((((((((((((((.(.((........)).).))))))))))))))))))))))))....)))))........ (-55.20)

Length sequence

: 103

Length match:

102