chr28_5

cmsearch-Rfam

Family :

MIR2118

Id:

RF01911

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01911

Description:

not description

Score:

36.5

E-value:

0.00022

From sequence:

993326

To sequence:

993468

Alignments:

                         v            v       v v            vvv                                                  NC
                 ::::::::<<<<<-<<<---<<<--<<<<<<<<<<-<<<<<<<<<<<-<<<-<-<<<<<<<___________________________________ CS
  RF01911      1 guuaGgaAGaagaAGaaaGAGAGguccugaGAgcggUaGGaAUGGGaACaUggAGGAAagcaUgAacUcUuuuUcucCUCuAGaAuuggAGaugGA 96    
                   +AG  + :A:AAGAAA+ G :G :::G G :::G             :UGG G   AG:+     U+UUUUU       AG+  UG+ G+U+ A
    chr28 993326 AAAAGCGGCUAAAAGAAAAUGAGGGAGGGAGGGGGG------------GGUGGCGGGGAGGCAUUGGUUUUUUU------GAGUGCUGUUGGUAUA 993403
                 *********************888866655544444............9************9988888887766......799999********** PP

                                             vvv            v v       v          v          NC
                 ______________>>>>>>>>->>>-->>>>>>>>>>>->>>>>>>>>>-->>>->>>->>>>>::::::::: CS
  RF01911     97 GAUUUggguuuuauguuUUCCcgAuGCCuCCCAUuCCuAucguUCucaggugCUCCuuCCucuuCCUUuuaguU 170   
                 +AUUU   U+U A :UU   CC A: CCU+C         ::: C C:::  : CCUUCCU:U: C UU     
    chr28 993404 AAUUUAACUCUCAGCUUUUUCCUACCCCUUC---------UCCACCCCCUAUUGCCUUCCUUUACCCUUCCAGC 993468
                 *************************999432.........23334455667788******************** PP

>>

RNAfold
>chr28_5
AGAAAGUUGUGAGAAAAGCGGCUAAAAGAAAAUGAGGGAGGGAGGGGGGG
GUGGCGGGGAGGCAUUGGUUUUUUUGAGUGCUGUUGGUAUAAAUUUAACU
CUCAGCUUUUUCCUACCCCUUCUCCACCCCCUAUUGCCUUCCUUUACCCU
UCCAGCUGCCUACCUCUCCC
..........((((...((((((..(((.....((((((((.((.(((((((((.(((((((....((((.....((((...(((......)))...))))..))))....))).))))....))))))))).)).))))))))....)))..)))))).....)))).. (-63.80)

Length sequence

: 170

Length match:

141