chr29_1

cmsearch-Rfam

Family :

Afu_254

Id:

RF01504

Type:

Gene; sRNA;

Taxonomy:

Eukaryota;

Ontology:

Not found

Description:

not description

Score:

34.4

E-value:

0.0067

From sequence:

373121

To sequence:

373066

Alignments:

                                                  v                    v   NC
                 <<<<--.-..<<<_____>>>--->>>>---<<<------<<____>>------>>> CS
  RF01504     83 uGCucC.u..GCaACUgCuGCUCCaGCaACUGCaACucCUGCuCcUGCugCuccuGC 136   
                  GC:CC    GC:ACUGC:GCU C:GC  CUGC  CU+CUGCU CUGCUGCU C GC
    chr29 373121 AGCACCg-uuGCUACUGCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGC 373066
                 ******5.56*********************************************** PP

RNAfold
>chr29_1
GCGCCCAAAAGUCUUUCCCCAUAUCCCUUUUCCUCUCCUGUGGACCGGAG
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGUAGCAAC
GGUGCUACGCCCUGCUGAGACGGCAAGAAUAAGAGAGAUGGCAACGCAUG
UGUAACC
(((.(((....((((((........((((((((........)))..)))))..((.((.((.((....)).)).)).))..((((((..((.((((((....)))))))).))))))...............)))))))))...))).......... (-43.40)

Length sequence

: 157

Length match:

54