chr29_10

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

34.1

E-value:

8.3e-06

From sequence:

227765

To sequence:

227894

Alignments:

                                 v                    v                  v                    v                  NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<<<-<---~~~~~~-->>>>>>->>>>>>->>>>>>>->>>::::::::::::::::: CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCAuGaGAUG*[47]*uCCCaUGCACUGCcUCuUCCCuGGCUCCuuucuCuccucuuUuu 136   
                 +A+  G+GA GAGA+++ :  AG:G::GAGGCAG G   G G  G       CCC   CACUGCCUC::C:CU  :  C+U+C++ C +CU+U  
    chr29 227765 GAAGAGAGAGGAGAGAAGAGGAGAGGGGAGGCAGGGGAGG-GGGG*[43]*CCCCUCCCACUGCCUCCCCUCUUAUU-CCUGCCUCCGCCUCUGA 227894
                 ***************99999**************775555.4333...8..33455567***************977.9999************* PP

>>

RNAfold
>chr29_10
AGGAAGAGAGAGGAGAGAAGAGGAGAGGGGAGGCAGGGGAGGGGGGAGGC
ACACGCAUGCACACCCACGCCCCUCACAGUGCGGCUACCCCCCUCCCACU
GCCUCCCCUCUUAUUCCUGCCUCCGCCUCUGAAGA
....((((.(.((((..(.((.((((((((((((((((((((((((.(((...(((((((........))........)))))))).)))))))))).))))))))))))))..)).)..)))).)))))..... (-77.10)

Length sequence

: 135

Length match:

128