chr29_11

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

32.0

E-value:

3.7e-05

From sequence:

227890

To sequence:

227767

Alignments:

                                 v                     v  v                                                    v  NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<<<-<---<<_________________________________________>>---->> CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCAuGaGAUGGaGCUaucAAcaAauugUGAgAaaaagaUGgaauUGUUgUuGCuCcCuCCC 96    
                 A+  GG+G  + GA       AG:G::GAGGCAG+G   G    G :G UA C  CA  +UG G G  +++G UG    UG  + UGC: C  CCC
    chr29 227890 AGGCGGAGGCAGGAAUA----AGAGGGGAGGCAGUGGGAG----GGGGGUAGCCGCACUGUGAGGGGCGUGGGUGUGCAUGCGUGUGCCUC-CCCC 227804
                 ***********999986....5567778******988777....35555555555555555555566666666666666665444444333.3445 PP

                 v                     v                   NC
                 >>>>->>>>>>->>>>>>>->>>:.:::::::::::::::: CS
  RF00690     97 aUGCACUGCcUCuUCCCuGGCUCC.uuucuCuccucuuUuu 136   
                    C CUGCCUC::C:CU     C +UUCUCUCCUCU+U U
    chr29 227803 CUCCCCUGCCUCCCCUCU----CCuCUUCUCUCCUCUCUCU 227767
                 56666******8777655....45699************** PP

>>

RNAfold
>chr29_11
AAGGAAGAGAGAGGAGAGAAGAGGAGAGGGGAGGCAGGGGAGGGGGGAGG
CACACGCAUGCACACCCACGCCCCUCACAGUGCGGCUACCCCCCUCCCAC
UGCCUCCCCUCUUAUUCCUGCCUCCGCCUCUGAAG
.....((((.(.((((..(.((.((((((((((((((((((((((((.(((...(((((((........))........)))))))).)))))))))).))))))))))))))..)).)..)))).))))).... (-77.10)

Length sequence

: 135

Length match:

122